Query= MSMg01no531_f05.b1 MSMg01no531_f05.b1 CHROMAT_FILE:
MSMg01no531_f05.b1 PHD_FILE: MSMg01no531_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:55 2005
(525 letters)
>mm_chr2_163195555_163196476
Length = 922
Score = 843 bits (436), Expect = 0.0
Identities = 488/519 (94%), Gaps = 23/519 (4%)
Strand = Plus / Minus
Query: 5 gaattctggctgtggcacagctttccccaaactgtccctagtgacatagagatacttcag 64
|||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 812 gaattctggctgagg-acagctttccccaaactgtccccagtgacatagagatacttcag 754
Query: 65 tgtgctctcttacgttccttgccctggtccttgtgagcacctgtgtgtttgaatgtgtgc 124
|||||||||||| |||||||||| ||||||||| ||||||||
Sbjct: 753 tgtgctctcttatgttccttgccttggtccttg-------------------atgtgtgc 713
Query: 125 actatcactgagaaggtccccaagccccgcagctggcctgggcgtctggaatgaggatct 184
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 712 actatccctgagaaggtccccaagccctgcagctggcctgggcgtctggaatgaggatct 653
Query: 185 ggtacccacaatcgcacactgtggcggctgtgtacagggaactctggggagagctggaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ggtacccacaatcgcacactgtggcggctgtgtacagggaactctggggagagctggaga 593
Query: 245 cttcatgaatatacagcctgagtgggagtggctccaggctccaattccagcccagcagaa 304
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ct---tgaatatacagcctgagtgggagtggctccaggctccaattccagcccagcagaa 536
Query: 305 tttccaattaagggagttttggagttaggaggaaacaggattgcagcgtcttcctgaagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tttccaattaagggagttttggagttaggaggaaacaggattgcagcgtcttcctgaagg 476
Query: 365 ctcttccctccctggggctttggtgctgtaagctggatgcagagagactggaagcagctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ctcttccctccctggggctttggtgctgtaagctggatgcagagagactggaagcagctc 416
Query: 425 ccagaactcagcaaggctggacttctgttttctgtagtcactagctcatggctccctgct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ccagaactcagcaaggctggacttctgttttctgtagtcactagctcatggctccctgct 356
Query: 485 tggttatgcctgtaagctcanggtccacaaccaggacat 523
|||||||||||||||||||| |||||||||||| |||||
Sbjct: 355 tggttatgcctgtaagctcagggtccacaaccaagacat 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 922
Length adjustment: 10
Effective length of query: 515
Effective length of database: 912
Effective search space: 469680
Effective search space used: 469680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_f05.g1 MSMg01no531_f05.g1 CHROMAT_FILE:
MSMg01no531_f05.g1 PHD_FILE: MSMg01no531_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:55 2005
(523 letters)
>mm_chr2_163032023_163032944
Length = 922
Score = 930 bits (481), Expect = 0.0
Identities = 493/497 (99%), Gaps = 1/497 (0%)
Strand = Plus / Plus
Query: 1 cttccattcagactttggaaggctgggagctcccagctcagccaaagcagactggtacca 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cttccattcagactttggaaggctgggagctcccagctcagccaaaacagactggtacca 260
Query: 61 agaggtcactgggacagggcgaacctggcttcatagctccatatgtggctttgcgagcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggtcactgggacagggcgaacctggcttcatagctccatatgtggctttgcgagcta 320
Query: 121 aagaagatgattttctagctcctttaaaaaaaaattacaatgcatgcatgtgcaggcgtt 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 321 aagaagatgattttctagctccttt-aaaaaaaattacaatgcatgcatgtgcagtcgtt 379
Query: 181 caagtcagagagcaacccgaggctctctcctttccactgtgtgtgtcccagacgtccaag 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caagtcagagagcaaccggaggctctctcctttccactgtgtgtgtcccagacgtccaag 439
Query: 241 gtttggcaacaggtccctttacctgctaagtcgcctgtaggctttctagctctctgttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtttggcaacaggtccctttacctgctaagtcgcctgtaggctttctagctctctgttaa 499
Query: 301 cacagagtatgatctaacagaataaaatgtaaatgagcttggttagctataaacacccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cacagagtatgatctaacagaataaaatgtaaatgagcttggttagctataaacacccat 559
Query: 361 gaacccactaatccagtctaggtagagaatatttccattacccccagaaaggcccttgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaacccactaatccagtctaggtagagaatatttccattacccccagaaaggcccttgtt 619
Query: 421 cccttcctagtgagcaccctacctttgccccagcagcaatttcttaccgggtttctattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cccttcctagtgagcaccctacctttgccccagcagcaatttcttaccgggtttctattc 679
Query: 481 cccaccttttttttttt 497
|||||||||||||||||
Sbjct: 680 cccaccttttttttttt 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 922
Length adjustment: 10
Effective length of query: 513
Effective length of database: 912
Effective search space: 467856
Effective search space used: 467856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
