BAC Information

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BAC

Clone NameMSMg01-531N09
Chromosome2 (Build37)
Map Location 85,522,446 - 85,665,198
singlet/doubletdoublet
Overlap geneGA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018
Upstream geneMed19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006
Downstream geneOlfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531N09.T7 (MSMg01no531_n09.b1)MSMg01-531N09.TJ (MSMg01no531_n09.g1)
ACCAG600140AG600141
length775769
length of high quality
(start - end)
626 (52 - 677)632 (79 - 710)
definitionCHROMAT_FILE: MSMg01no531_n09.b1 PHD_FILE: MSMg01no531_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:36 2005CHROMAT_FILE: MSMg01no531_n09.g1 PHD_FILE: MSMg01no531_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,522,446 - 85,523,066)(85,664,787 - 85,665,198)
sequence
CCCCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAATGCTGTTATTCTGTTAGATGGACATAGCTATAAACTG
CTCTCTAAGTACTTATCTTTATATGAGAGTTTAGCACAACTCTCAACCCT
TATCAGAAAAGCAGTAAATTGGAAGGGTACAAAATTAACCTATAACAATA
GGTAGCTTTTCTATACATAGTAACAATCACATTGAGAAAAAATTATAGAA
ACATCTCCACTCACATTAGTAATATAAAAAATATCTAGGAATAAACCAAA
CAAAGGATGTAAAATAGTCTACAGAGAAAACTTTGAATCTATAAAGAAAG
AGATTGAGATAGATGCTTAAAGATGGAACTACACGTCATGCTCATGGACT
TGTAGAACTGAGCATTTGACAAAAGAACTGTATTGATTTAGTGCAATTTC
ATTCAAAATCCATATATTGCAGAAATAGAAGAGACAATACTAAAATTTGT
GTGGAACCACAAAATACCTGGAGAGGCAAAGCAATCCTAAGCAAAAAGAA
AAATGCTGGAGAGATTATCATTCCAAATTTCAACATGTATTATTGAGCTA
CATCAATAAAGTCCTATATGGTACTGGTGCAGATCGGACATGTAATTCAA
TGGAATAAAATTAAAGACTCAAACAGGATTGCTTGTAACTACAGCCATTG
GTATTCAATACATATGTCACAGATATATACTGGATAAAGACAGTTTCTTC
AAAAATGATACTGGGAAAACCGTAT
TCTCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGAGCCCTAAAGGGAGGAAT
GGCTAAGCAAATCTATTTGTAATAAGATCCACCAAAAGTACTTTTGAATC
AAAAGTAGACTACAGAGATTTGCTTGCAGGGAGACTATAAGAATATCAAA
ATTGTGGAATTTACATAAAAAAATACTTCAGCCGCAGTTCTACATGTGTT
GAGAATTGATATTTCTCTTATTGAATTTATTTACATTATTTATGGAGAGA
TAAGACTGAGGGAAATGAGGTCTAGTAACCAGCCCAAATTGGGATCCAAC
TCACGGAGATGCTCCAAGAACTGACACTATTAATAATGCTGTGGTATGTT
TACAGACAAGGGCCTGGCATGGCTGTGCTCTTAGAAGCCCAATAAGCAGC
TGAGTTAGATGCAGATACTTACACCCAACCAATGGACAGAAGCCTGGGAC
CCCTGTGATTGAATTGGGGAAAGGCTAGAAGAAGCTGAGGAGGAGGGCAA
CTCCATAGGAAGACCAGTAGTCTCAACTAACCTGGACCCCTGAGATCTCT
GACACTGAGCCACCAACCAGGCAGCATACACCAACTGATTTGAGGCGTCT
TACCTATGTACAGCAGAGGACTGCCTGGTCTGGCCTCAGTGAGAAAAGAG
GCACCTAACCTTTGAGAGACTTGAGGTGCCAGGGAGTGGGGAGGTCTGGT
GGGGTAGAGGGACAGCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_n09.b1 MSMg01no531_n09.b1 CHROMAT_FILE:
MSMg01no531_n09.b1 PHD_FILE: MSMg01no531_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:36 2005
         (626 letters)



>mm_chr2_85522242_85523267
          Length = 1026

 Score = 1141 bits (590), Expect = 0.0
 Identities = 614/622 (98%), Gaps = 1/622 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgctgttattctgttagatggacatagctataaactgctctctaagtactta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgctgttattctgttagatggacatagctataaactgctctctaagtactta 264

                                                                       
Query: 65  tctttatatgagagtttagcacaactctcaacccttatcagaaaagcagtaaattggaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctttatatgagagtttagcacaactctcaacccttatcagaaaagcagtaaattggaag 324

                                                                       
Query: 125 ggtacaaaattaacctataacaataggtagcttttctatacatagtaacaatcacattga 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 ggtacaaaattaacctataacaataggtagcttttctatacacagtaacaatcacattga 384

                                                                       
Query: 185 gaaaaaattatagaaacatctccactcacattagtaatataaaaaatatctaggaataaa 244
           ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 gaaaaaattatagaaacatttccactcacattagtaatgtaaaaaatatctaggaataaa 444

                                                                       
Query: 245 ccaaacaaaggatgtaaaatagtctacagagaaaactttgaatctataaagaaagagatt 304
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 ccaaacaaaggatgtaaaatagtctacagagaaaactttgaatctataaa-aaagagatt 503

                                                                       
Query: 305 gagatagatgcttaaagatggaactacacgtcatgctcatggacttgtagaactgagcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagatagatgcttaaagatggaactacacgtcatgctcatggacttgtagaactgagcat 563

                                                                       
Query: 365 ttgacaaaagaactgtattgatttagtgcaatttcattcaaaatccatatattgcagaaa 424
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgacaaaagaattgtattgatttagtgcaatttcattcaaaatccatatattgcagaaa 623

                                                                       
Query: 425 tagaagagacaatactaaaatttgtgtggaaccacaaaatacctggagaggcaaagcaat 484
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tagaagagacagtactaaaatttgtgtggaaccacaaaatacctggagaggcaaagcaat 683

                                                                       
Query: 485 cctaagcaaaaagaaaaatgctggagagattatcattccaaatttcaacatgtattattg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctaagcaaaaagaaaaatgctggagagattatcattccaaatttcaacatgtattattg 743

                                                                       
Query: 545 agctacatcaataaagtcctatatggtactggtgcagatcggacatgtaattcaatggaa 604
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 744 agctacatcaataaagtcctatatcttactggtgcagatcggacatgtaattcaatggaa 803

                                 
Query: 605 taaaattaaagactcaaacagg 626
           ||||||||||||||||||||||
Sbjct: 804 taaaattaaagactcaaacagg 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no531_n09.g1 MSMg01no531_n09.g1 CHROMAT_FILE:
MSMg01no531_n09.g1 PHD_FILE: MSMg01no531_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:36 2005
         (632 letters)



>mm_chr2_85664787_85665817
          Length = 1031

 Score =  783 bits (405), Expect = 0.0
 Identities = 411/413 (99%), Gaps = 1/413 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgagccctaaagggaggaatggctaagcaaatctatttgtaataagatccaccaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cctgagccctaaagggaggaatggctaagcaaatctatttgtaataagatccaccaaaag 353

                                                                       
Query: 61  tacttttgaatcaaaagtagactacagagatttgcttgcagggagactataagaatatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tacttttgaatcaaaagtagactacagagatttgcttgcagggagactataagaatatca 293

                                                                       
Query: 121 aaattgtggaatttacataaaaaaatacttcagccgcagttctacatgtgttgagaattg 180
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 292 aaattgtggaatttacat-aaaaaatacttcagccgcagttctacatatgttgagaattg 234

                                                                       
Query: 181 atatttctcttattgaatttatttacattatttatggagagataagactgagggaaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 atatttctcttattgaatttatttacattatttatggagagataagactgagggaaatga 174

                                                                       
Query: 241 ggtctagtaaccagcccaaattgggatccaactcacggagatgctccaagaactgacact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ggtctagtaaccagcccaaattgggatccaactcacggagatgctccaagaactgacact 114

                                                                       
Query: 301 attaataatgctgtggtatgtttacagacaagggcctggcatggctgtgctcttagaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 attaataatgctgtggtatgtttacagacaagggcctggcatggctgtgctcttagaagc 54

                                                                
Query: 361 ccaataagcagctgagttagatgcagatacttacacccaaccaatggacagaa 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  ccaataagcagctgagttagatgcagatacttacacccaaccaatggacagaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1031
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1021
Effective search space:   635062
Effective search space used:   635062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)