BAC Information

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BAC

Clone NameMSMg01-532A16
Chromosome2 (Build37)
Map Location 20,132,861 - 20,297,017
singlet/doubletdoublet
Overlap geneLOC667609, Etl4
Upstream geneArmc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532A16.T7 (MSMg01no532_a16.b1)MSMg01-532A16.TJ (MSMg01no532_a16.g1)
ACCAG600296AG600297
length745742
length of high quality
(start - end)		633 (53 - 685)556 (83 - 638)
definitionCHROMAT_FILE: MSMg01no532_a16.b1 PHD_FILE: MSMg01no532_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:52 2005CHROMAT_FILE: MSMg01no532_a16.g1 PHD_FILE: MSMg01no532_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,296,441 - 20,297,017)(20,132,861 - 20,133,414)
sequence
NAAAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCGTAGCAGTGAGGTTACCCACAGCCCCATCAGTCATCC
TCCTGAGGGTAGGAATGACAGTGAATAAAGCACTACGGCCTCTGACAACA
GAAAGCTTCTTCTCATCGTCTTTCCTGACCTCTGGTAACCTGGGCCACAC
ATTTAACTGGCTAGCACATCTGCCAAAGTCAGGCCTACTGGAGACTTGAC
CCTGTGACGTCAACATGCTGCCTCCCCCTAGCTGGGTGAGGTTTCTGCTT
TTACAGGAAGGGACATGTGAAAGTGGGCTGTTTCCCACACATTCCAAAAG
GAAAAAAAAAAACTGCCTTGGTTTTCATGCTTGTATTAGAATGCTCAAGA
GGGTTAATGAGGCCGAGCTTAAATGTAAGGGAGGCGTGTGTCTTTAATCC
CAGCACTTGGAGGCTGAGGCAGGCAGATGTCTGTATGAGTTCAACCTAGT
CTACATAGTGAGTTACAGCCAGTCCTATATCAACACTGTCATAAATAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAAAGTGGATGGCAG
GAAGTGAGGAAGCACAAGGGAGGAACCAAGAAGGGAGTTCATTTGCATAT
GCATGCCTGAGTCAGCCAGGCTAACTCTCAAGGTCCTAGGCAGAAGCTAG
TCCCTTGCTGTGTCCTGCCCTCAGCAGCTTTTATATCTGTGTCTN

NTTTTTGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGACTGAGAAATGCAAA
CTACACAGACTGAGAGCTATATGACCATAGGCTGAAATACAGCAACAAAC
CTGTAAGCCAAGGAGTGCCAGCGATACAGGGACCTACCAAATGCAGGGAA
GAGTTCTTCTCTAAGAAGGCACTGGGGGAGCATGGCCCTGCTAGATCCCA
CACTTCTAGGCTCCAAACCATAAAAGAACACATTTGAAGCAACCGAGTTC
TTAGACATTTGCTGTGGCACTCCGTGGAAACTAACTAATACATAAGACAT
CATGGCATTCAGCACTGTCTTCACACTGCTGGCTTTCCCTTCATCACATT
CTTTGGTTTAATCAATCATAGGTCCCAATGCAGATCCCATATGATGTAAC
CATGAGGCAGAGATGTTGTAAAGTGAGGGAGAATGGTGTCTACTTGGGCT
TTTAAAAATGATGTTTCAAAGACCCCTGGGATAGATACTGGATTGGTCCC
TTTAGGCTGATTTCTGTTTGTCCCTCCAGATTTTGTACTGTATCATCTCT
TGCATCAGAAAATAGTACCTCAATATGAGTAACTAGAATCCGAAACCCCT
TCAAACTTAGTATCCCAGGTTCATATGCTGCTTTCAAAAAGATGAAAACA
GCTGGTATGGGACAGGCAAGATGGAGGGATAGATTACATANG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_a16.b1 MSMg01no532_a16.b1 CHROMAT_FILE:
MSMg01no532_a16.b1 PHD_FILE: MSMg01no532_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:52 2005
         (633 letters)



>mm_chr2_20296441_20297473
          Length = 1033

 Score = 1116 bits (577), Expect = 0.0
 Identities = 577/577 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccgtagcagtgaggttacccacagccccatcagtcatcctcctgagggtaggaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gaattccgtagcagtgaggttacccacagccccatcagtcatcctcctgagggtaggaat 518

                                                                       
Query: 65  gacagtgaataaagcactacggcctctgacaacagaaagcttcttctcatcgtctttcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gacagtgaataaagcactacggcctctgacaacagaaagcttcttctcatcgtctttcct 458

                                                                       
Query: 125 gacctctggtaacctgggccacacatttaactggctagcacatctgccaaagtcaggcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gacctctggtaacctgggccacacatttaactggctagcacatctgccaaagtcaggcct 398

                                                                       
Query: 185 actggagacttgaccctgtgacgtcaacatgctgcctccccctagctgggtgaggtttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 actggagacttgaccctgtgacgtcaacatgctgcctccccctagctgggtgaggtttct 338

                                                                       
Query: 245 gcttttacaggaagggacatgtgaaagtgggctgtttcccacacattccaaaaggaaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gcttttacaggaagggacatgtgaaagtgggctgtttcccacacattccaaaaggaaaaa 278

                                                                       
Query: 305 aaaaaactgccttggttttcatgcttgtattagaatgctcaagagggttaatgaggccga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aaaaaactgccttggttttcatgcttgtattagaatgctcaagagggttaatgaggccga 218

                                                                       
Query: 365 gcttaaatgtaagggaggcgtgtgtctttaatcccagcacttggaggctgaggcaggcag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gcttaaatgtaagggaggcgtgtgtctttaatcccagcacttggaggctgaggcaggcag 158

                                                                       
Query: 425 atgtctgtatgagttcaacctagtctacatagtgagttacagccagtcctatatcaacac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 atgtctgtatgagttcaacctagtctacatagtgagttacagccagtcctatatcaacac 98

                                                                       
Query: 485 tgtcataaataaataaataaataaataaataaataaataaataaataaataaagtggatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  tgtcataaataaataaataaataaataaataaataaataaataaataaataaagtggatg 38

                                                
Query: 545 gcaggaagtgaggaagcacaagggaggaaccaagaag 581
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  gcaggaagtgaggaagcacaagggaggaaccaagaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_a16.g1 MSMg01no532_a16.g1 CHROMAT_FILE:
MSMg01no532_a16.g1 PHD_FILE: MSMg01no532_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:52 2005
         (556 letters)



>mm_chr2_20132659_20133614
          Length = 956

 Score = 1056 bits (546), Expect = 0.0
 Identities = 552/554 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gactgagaaatgcaaactacacagactgagagctatatgaccataggctgaaatacagca 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 203 gactgagaaatgcaaactacacagactgagagctatatgaccataggctgatatacagca 262

                                                                       
Query: 63  acaaacctgtaagccaaggagtgccagcgatacagggacctaccaaatgcagggaagagt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acaaacctgtaagccaaggagtgccagcgatacagggacctaccaaatgcagggaagagt 322

                                                                       
Query: 123 tcttctctaagaaggcactgggggagcatggccctgctagatcccacacttctaggctcc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcttctctaagaaggcactgggggagcatggccctgctagatcccacacttctaggctcc 382

                                                                       
Query: 183 aaaccataaaagaacacatttgaagcaaccgagttcttagacatttgctgtggcactccg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaaccataaaagaacacatttgaagcaaccgagttcttagacatttgctgtggcactccg 442

                                                                       
Query: 243 tggaaactaactaatacataagacatcatggcattcagcactgtcttcacactgctggct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tggaaactaactaatacataagacatcatggcattcagcactgtcttcacactgctggct 502

                                                                       
Query: 303 ttcccttcatcacattctttggtttaatcaatcataggtcccaatgcagatcccatatga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttcccttcatcacattctttggtttaatcaatcataggtcccaatgcagatcccatatga 562

                                                                       
Query: 363 tgtaaccatgaggcagagatgttgtaaagtgagggagaatggtgtctacttgggctttta 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgtaaccatgaggcagagatgttgtaaagtgagggagaatggtgtctacttgggctttta 622

                                                                       
Query: 423 aaaatgatgtttcaaagacccctgggatagatactggattggtccctttaggctgatttc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaaatgatgtttcaaagacccctgggatagatactggattggtccctttaggctgatttc 682

                                                                       
Query: 483 tgtttgtccctccagattttgtactgtatcatctcttgcatcagaaaatagtacctcaat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgtttgtccctccagattttgtactgtatcatctcttgcatcagaaaatagtacctcaat 742

                         
Query: 543 atgagtaactagaa 556
           ||| ||||||||||
Sbjct: 743 atgggtaactagaa 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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