BAC Information

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BAC

Clone NameMSMg01-532B15
Chromosome2 (Build37)
Map Location 34,781,775 - 34,782,240
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19
Downstream geneTraf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532B15.T7 (MSMg01no532_b15.b1)MSMg01-532B15.TJ (MSMg01no532_b15.g1)
ACCAG600341AG600342
length744752
length of high quality
(start - end)
636 (53 - 688)468 (84 - 551)
definitionCHROMAT_FILE: MSMg01no532_b15.b1 PHD_FILE: MSMg01no532_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:56 2005CHROMAT_FILE: MSMg01no532_b15.g1 PHD_FILE: MSMg01no532_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTGGTCTTACCACATTCCCCATCATCCTGAAGCAGCT
GGGCTGATAGAAAGATGGAATGGCCTTTTGAAGGCGCAGTTACAGCGCCA
ATTAGGTGGTAACAGCTTGGAAGGCTGGGGTAGAGTTCTTCAGAAGGCAG
TATATGCTTTGAATCAGCGCTCGATATATGGTACAGTTTCACCCATAGCC
AGGATTCATGGGTCCAGGAATCAAGGGGTGGAAAACGGAATAGTTCCACT
TACTATCACTCCTAGTGACCCTCTAGGAAAATTTTTGCTTCCTGTCCCCA
TAACTCTAGGTTCTGCTGGCCTAGAAGTTTTGGCTCCAGAGAGGGGAGTG
CTCCTACCAGGAGCTACAACAAACATTTCATTGAACTGGAAACTCAGACT
TCCCCCTGGTCATTTTGGGCTTCTAATGCCCCTAAACCAACAGGCTAAAA
AAGGAATAACAGTGTTAGGAGGGGTGATAGATCCAGATTACCATGGGGAA
ATTGGATTACCTCTTCACAATGGTGGTAAGCAAGATTATGTCTGGAGTGT
AGGAGATCCCTTAGGGCATCTCTTAGTACTACCATGTCCTGTGATTAAAG
TCAATGGGAAACTACAACAGCCTAATCCAAGCAGGATGACAAAGAACGCA
GACCCATCANGAATGAAGGTATGGGTCAATCCTCCAGGAAAAGG
TTTTCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACCCGGGCCATGTCT
GTAGCTTCTCATACGCTCTATCCCAACCTGGTCTTCTGATACACACAGCA
GCCTAAGACTGGCTGCACACTGTATCTTGCAGTTTCCACTCAGAATCCTG
GACTATAACTCACCTGGGCTGCATTCTTTGTGGCTGAATATTTACTTCCC
AGACAGTCCCCACCTCTCCTGTAGAGGAGTGGTTAGGATTCCACTTGCAG
GGTTAGACACCTCTGCTTGTGCACTCCTATAGGGCACACCACTTCTCTGC
TCATCATGTTTTGGGAGGGATGCCTGATACAAGGTACAGCAACATAGCTT
TCTGTTGAGCTGGTCAAGGGTTGCCCTGGGCATGGGGTTGGAGAGTGTGG
GTGGAAGGGCTTCTTCTAAGTGGTTCTCTGACACAGCCATTCAGAGGAGT
TATGCTCTGGACACCCACTCGCCAGGGAGTGTGGTCTTCATCTCATAACC
TCTGAAGCCCAATGATATGTTGAAAGAAAACCTTCCATTTCTCTGGACGG
ACAGTGCTGTGTAGCTAGCTGTATGATGCTTCGCCGGGCTTTCCCCATCA
CATGACCTTTCACAAGTCAGCTACAGGAATGCCCTTTGAATGCTCTTTCT
GGCTTCAATTCCAGGATTTCTGCCCTTGTGATGCTTGGTTACCTGGGTGT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_b15.g1 MSMg01no532_b15.g1 CHROMAT_FILE:
MSMg01no532_b15.g1 PHD_FILE: MSMg01no532_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:56 2005
         (468 letters)



>mm_chr2_34781573_34782440
          Length = 868

 Score =  847 bits (438), Expect = 0.0
 Identities = 459/466 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   acccgggccatgtctgtagcttctcatacgctctatcccaacctggtcttctgatacaca 62
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 acccaggccatgtctgtagcttctcatacgctctatcccaacctggtcttctgatacaca 262

                                                                       
Query: 63  cagcagcctaagactggctgcacactgtatcttgcagtttccactcagaatcctggacta 122
           || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 263 caccagcctaagactggcttcacactgtatcctgcagtttccactcagaatcctggatta 322

                                                                       
Query: 123 taactcacctgggctgcattctttgtggctgaatatttacttcccagacagtccccacct 182
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taactcacctgggctgggttctttgtggctgaatatttacttcccagacagtccccacct 382

                                                                       
Query: 183 ctcctgtagaggagtggttaggattccacttgcagggttagacacctctgcttgtgcact 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctcctgtagaggagtggttaggattccacttgcagggttagacacctctgcttgtgcact 442

                                                                       
Query: 243 cctatagggcacaccacttctctgctcatcatgttttgggagggatgcctgatacaaggt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cctatagggcacaccacttctctgctcatcatgttttgggagggatgcctgatacaaggt 502

                                                                       
Query: 303 acagcaacatagctttctgttgagctggtcaagggttgccctgggcatggggttggagag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acagcaacatagctttctgttgagctggtcaagggttgccctgggcatggggttggagag 562

                                                                       
Query: 363 tgtgggtggaagggcttcttctaagtggttctctgacacagccattcagaggagttatgc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgtgggtggaagggcttcttctaagtggttctctgacacagccattcagaggagttatgc 622

                                                         
Query: 423 tctggacacccactcgccagggagtgtggtcttcatctcataacct 468
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tctggacacccactcgccagggagtgtggtcttcatctcataacct 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)