Query= MSMg01no532_e18.b1 MSMg01no532_e18.b1 CHROMAT_FILE:
MSMg01no532_e18.b1 PHD_FILE: MSMg01no532_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:11 2005
(643 letters)
>mm_chr2_154077682_154078724
Length = 1043
Score = 1183 bits (612), Expect = 0.0
Identities = 633/640 (98%), Gaps = 1/640 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtgcatacccagaacccaagaaatcaaccatagatatcccagtggcagttaat 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 204 gaattcagtgcagacccagaacccaagaaatcaaccatagatatcccagtggcagttagt 263
Query: 65 caaggggatgaccatacaattatcccaaggcagttatgcatgcaaatgggcacagtaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaggggatgaccatacaattatcccaaggcagttatgcatgcaaatgggcacagtaaag 323
Query: 125 aaaacgccaacatgactgctccagaatatggctaaggggaaggtttatattgtaaataat 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaacaccaacatgactgctccagaatatggctaaggggaaggtttatattgtaaataat 383
Query: 185 agagagaaaatgtccagaggcacctggaagactccagagcagagagaaagagaaacagag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agagagaaaatgtccagaggcacctggaagactccagagcagagagaaagagaaacagag 443
Query: 245 ttgacatggccagggccatctgtgagagatgggagaagagcagtgggggga-gggggaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 444 ttgacatggccagggccatctgtgagagatgggagaagagcagtggggggagggggggga 503
Query: 304 ggacttaccattgtaaagagaataaactggtatctgggaagaaaaggctgggaagatttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggacttaccattgtaaagagaataaactggtatctgggaagaaaaggctgggaagatttt 563
Query: 364 taaaaaagctaggataatgacagggaggtgctttgaaatatagagtaagttcttgtgagt 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttaaaaagctaggataatgacagggaggtgctttgaaatatagagtaagttcttgtgagt 623
Query: 424 acacactgagagagccaggaggctggcctgggctttgatatgcaagtatatgtatatgtc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acacactgagagagccaggaggctggcctgggctttgatatgcaagtatatgtatatgtc 683
Query: 484 aatggtgatatatatcccttctaccagaattaagggaaaagactccttttggcaggtggg 543
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatggtgatatgtatcccttctaccagaattaagggaaaagactccttttggcaggtggg 743
Query: 544 aaccaatttcataagttcttgaggaatgctcccttttatctaaccaccagaaatcctcct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaccaatttcataagttcttgaggaatgctcccttttatctaaccaccagaaatcctcct 803
Query: 604 atagtccagtttgagctcatttttttatatatggactttc 643
||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atagtccagtttgagctcatttttttatatatggactttc 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_e18.g1 MSMg01no532_e18.g1 CHROMAT_FILE:
MSMg01no532_e18.g1 PHD_FILE: MSMg01no532_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:11 2005
(607 letters)
>mm_chr2_154257640_154258644
Length = 1005
Score = 1096 bits (567), Expect = 0.0
Identities = 580/585 (99%), Gaps = 2/585 (0%)
Strand = Plus / Minus
Query: 1 atactgtttatgagttccatctgaatgagcatgtttatgatgaaaattaacagaatacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atactgtttatgagttccatctgaatgagcatgtttatgatgaaaattaacagaatacaa 524
Query: 61 aaacattgtgttgggtatgcctataaacccagtacccaggagatagagaccaggagcatc 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 523 aaacattgtgttgggtatgcctataaatccagtacccaggagatagagaccaggagcatc 464
Query: 121 aagaattctgagcaagtttgaaaaatgaggaaggaacataatgagttcctgcctcaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aagaattctgagcaagtttgaaaaatgaggaaggaacataatgagttcctgcctcaaaat 404
Query: 181 aaacaagtaaaataaaatccaaattaaatactcaagaaaattatgaaaaaaataaagcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aaacaagtaaaataaaatccaaattaaatactcaagaaaattatgaaaaaaataaagcac 344
Query: 241 cgtaattttttttttaaagaacttgttgttgagacaggttcactatataactaaggctgg 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cgtaattttttttt--aagaacttgttgttgagacaggttcactatataactaaggctgg 286
Query: 301 cctcagactcatttccttcagtctagttttaagtctccaccttggcctcttgcgtgctgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cctcagactcatttccttcagtctagttttaagtctccaccttggcctcttgcgtgctgg 226
Query: 361 tgtcgcaaagctgcaataccacaagtgaactagagagctgggtgtccttgctctggctac 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tctcgcaaagctgcaataccacaagtgaactagagagctgggtgtccttgctctggctac 166
Query: 421 cacttaatttgatgatagacgttatcagagaaagcaggcccacaaagttatcaaacacac 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 165 cacttaatttgatgatagacgttatcagagaaagcaggaccacaaagttatcaaacacac 106
Query: 481 cagaccaaggaatgctacagctccttcacctggaccatacagtaaaaggggctcctaacg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 cagaccaaggaatgctacagctccttcacctggaccatacagtaaaaggggctcctaacg 46
Query: 541 ttagctgagacatcctcacccatcatcaagatacccacaagcact 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ttagctgagacatcctcacccatcatcaagatacccacaagcact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1005
Length adjustment: 10
Effective length of query: 597
Effective length of database: 995
Effective search space: 594015
Effective search space used: 594015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
