BAC Information

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BAC

Clone NameMSMg01-532I03
Chromosome2 (Build37)
Map Location 147,163,964 - 147,357,066
singlet/doubletdoublet
Overlap genePax1
Upstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920
Downstream geneLOC640914, A530006G24Rik, LOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532I03.T7 (MSMg01no532_i03.b1)MSMg01-532I03.TJ (MSMg01no532_i03.g1)
ACCAG600650AG600651
length751761
length of high quality
(start - end)		542 (50 - 591)618 (75 - 692)
definitionCHROMAT_FILE: MSMg01no532_i03.b1 PHD_FILE: MSMg01no532_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:26 2005CHROMAT_FILE: MSMg01no532_i03.g1 PHD_FILE: MSMg01no532_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,163,964 - 147,164,501)(147,356,572 - 147,357,066)
sequence
GAGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTGCTGTCTGCACCTTTTGTAAATGTGAGGTAAAGGTGCC
AGGCTGTTAATGGTTTGCTCACCGACAGTATGGAAGTGGGTGTCAGTGAG
TGAGCTCGGCACACCAACTATATTCCTACCTCTACTGGACTGCCTCCCTC
ATGCAGGTTAAATTCAGAGGTGTGACTACTGAAGGCCCAGTGGCCTCCCT
GCAGAGCCACCATGCAGTTACCTTCTAGAGGAGGCCATTTTGGAGGGACA
TCTTCCTACCTCCTGCGGAAAGCAAGGCACAGAATAATAATTTTTGCCTT
CACTTCCCCTCGGACTGGTTCAGAAGCCCACCTGCCCAAGGAAGGCTCCA
GGGATGACGTCATCTATACTCACAGTGAGATACGGGGGAAGTGAAGAGAT
GAGGCTTATGCAACTTCAGCAGCTTCAGACACCAGGTCTCTCTCCCTTCC
TTGAAAGCCACACAGATGCCCATGCAGGCTGTTTGTTGAGAAAATCCATC
TCCAGCCAGCCAGGCTGAATTCCAGTCTTCACCGTCTTCTGAGGCCTGAA
GCCTTGAAGGGGCTCCCTGGACGCAGATGTCTAGGATTGCATCCCAGGCA
GCTGGCGGAATCTGCTCTCTGGTTATTCCCCATGCCACTTAGTCTTGGCC
GGGGCCAGACAGGAGGCAACTCCCTTTCACTGGCAGTGTCTTCCGGACTG
A

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTCACCAGGGAATGGAACAGTTT
GAAAGGATTAGGTGGTGTGGCCTTGTTGGAGTAAGTGTGTTACTATGGGT
GGGCTTTGAGGTTTCAAAAGTTCAAACCAGGTCGAGTCTTCCTGTAGGTT
CTCTTCCTCCTGCCTGTGGATCAGAATATAGAACTCAGCTCCTTCTCCAG
CACTTTATCTGCCTGTGTGCTTCTATGCTTCCCACCATGAACATAATGGA
CTAAGCCTCTGAAACGCAAGCAAACCCCCAAATCAATGTCTACTGTTTAA
AGAGTTGATTTGGTCTTAATGACTCAGCAGTAGAACAGTGACTAAGAAGT
TGTAGACAACAATAATGCCAAATTCATATTGTTACACTGGGATTGGGTGA
ACCAACAAAAGTACAGTGCTTAAAATTATGTAGAACAGTAGATGCTTAGG
AATATTTGTGATTTTTTTATCTGTGTCAAGTACTTTCCCTTGAAGTATTT
CTCTTATCATTTTGTTCCATGTAGCTGTAACATACCTATACTTCATAGCA
TGTCTTCATCACCTCAGACAGAGAACCTAGTGTCTCTTTCCATGGCACCT
AAGAATAAGCTTGAGTTGTGTCTTCCCGTTCAATACACCTTAGACTTAGC
ATTCTTCTGAGTTCTAAAAATGGTTCTCTGAACATTGAACTCATGAGTAT
TGAGCCTATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_i03.b1 MSMg01no532_i03.b1 CHROMAT_FILE:
MSMg01no532_i03.b1 PHD_FILE: MSMg01no532_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:26 2005
         (542 letters)



>mm_chr2_147163760_147164701
          Length = 942

 Score = 1033 bits (534), Expect = 0.0
 Identities = 537/538 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttgctgtctgcaccttttgtaaatgtgaggtaaaggtgccaggctgttaatgg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttgctgtcagcaccttttgtaaatgtgaggtaaaggtgccaggctgttaatgg 264

                                                                       
Query: 65  tttgctcaccgacagtatggaagtgggtgtcagtgagtgagctcggcacaccaactatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgctcaccgacagtatggaagtgggtgtcagtgagtgagctcggcacaccaactatat 324

                                                                       
Query: 125 tcctacctctactggactgcctccctcatgcaggttaaattcagaggtgtgactactgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcctacctctactggactgcctccctcatgcaggttaaattcagaggtgtgactactgaa 384

                                                                       
Query: 185 ggcccagtggcctccctgcagagccaccatgcagttaccttctagaggaggccattttgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcccagtggcctccctgcagagccaccatgcagttaccttctagaggaggccattttgg 444

                                                                       
Query: 245 agggacatcttcctacctcctgcggaaagcaaggcacagaataataatttttgccttcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agggacatcttcctacctcctgcggaaagcaaggcacagaataataatttttgccttcac 504

                                                                       
Query: 305 ttcccctcggactggttcagaagcccacctgcccaaggaaggctccagggatgacgtcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcccctcggactggttcagaagcccacctgcccaaggaaggctccagggatgacgtcat 564

                                                                       
Query: 365 ctatactcacagtgagatacgggggaagtgaagagatgaggcttatgcaacttcagcagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctatactcacagtgagatacgggggaagtgaagagatgaggcttatgcaacttcagcagc 624

                                                                       
Query: 425 ttcagacaccaggtctctctcccttccttgaaagccacacagatgcccatgcaggctgtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcagacaccaggtctctctcccttccttgaaagccacacagatgcccatgcaggctgtt 684

                                                                     
Query: 485 tgttgagaaaatccatctccagccagccaggctgaattccagtcttcaccgtcttctg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgttgagaaaatccatctccagccagccaggctgaattccagtcttcaccgtcttctg 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_i03.g1 MSMg01no532_i03.g1 CHROMAT_FILE:
MSMg01no532_i03.g1 PHD_FILE: MSMg01no532_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:27 2005
         (618 letters)



>mm_chr2_147356049_147357066
          Length = 1018

 Score =  957 bits (495), Expect = 0.0
 Identities = 495/495 (100%)
 Strand = Plus / Minus

                                                                        
Query: 124  gttctcttcctcctgcctgtggatcagaatatagaactcagctccttctccagcacttta 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 gttctcttcctcctgcctgtggatcagaatatagaactcagctccttctccagcacttta 959

                                                                        
Query: 184  tctgcctgtgtgcttctatgcttcccaccatgaacataatggactaagcctctgaaacgc 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958  tctgcctgtgtgcttctatgcttcccaccatgaacataatggactaagcctctgaaacgc 899

                                                                        
Query: 244  aagcaaacccccaaatcaatgtctactgtttaaagagttgatttggtcttaatgactcag 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898  aagcaaacccccaaatcaatgtctactgtttaaagagttgatttggtcttaatgactcag 839

                                                                        
Query: 304  cagtagaacagtgactaagaagttgtagacaacaataatgccaaattcatattgttacac 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838  cagtagaacagtgactaagaagttgtagacaacaataatgccaaattcatattgttacac 779

                                                                        
Query: 364  tgggattgggtgaaccaacaaaagtacagtgcttaaaattatgtagaacagtagatgctt 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778  tgggattgggtgaaccaacaaaagtacagtgcttaaaattatgtagaacagtagatgctt 719

                                                                        
Query: 424  aggaatatttgtgatttttttatctgtgtcaagtactttcccttgaagtatttctcttat 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718  aggaatatttgtgatttttttatctgtgtcaagtactttcccttgaagtatttctcttat 659

                                                                        
Query: 484  cattttgttccatgtagctgtaacatacctatacttcatagcatgtcttcatcacctcag 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658  cattttgttccatgtagctgtaacatacctatacttcatagcatgtcttcatcacctcag 599

                                                                        
Query: 544  acagagaacctagtgtctctttccatggcacctaagaataagcttgagttgtgtcttccc 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598  acagagaacctagtgtctctttccatggcacctaagaataagcttgagttgtgtcttccc 539

                           
Query: 604  gttcaatacacctta 618
            |||||||||||||||
Sbjct: 538  gttcaatacacctta 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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