BAC Information

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BAC

Clone NameMSMg01-533G11
Chromosome2 (Build37)
Map Location 35,582,383 - 35,582,967
singlet/doubletsinglet
Overlap geneDab2ip
Upstream geneGapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194
Downstream geneTtll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533G11.T7 (MSMg01no533_g11.b1)MSMg01-533G11.TJ (MSMg01no533_g11.g1)
ACCAG601334AG601335
length758755
length of high quality
(start - end)
---585 (76 - 660)
definitionCHROMAT_FILE: MSMg01no533_g11.b1 PHD_FILE: MSMg01no533_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:36 2005CHROMAT_FILE: MSMg01no533_g11.g1 PHD_FILE: MSMg01no533_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCGCCCTTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATA
GGATCCGCGGTAATTCCTGATCTTTCTCAGACTTTTATCATGAACGGATG
TTGGATTTTTGTCAAATGCTTTCTCAGCATCTAATGACGATGATCATGTG
GTCTTTGTCTTTGAGTTTGTTTATATAATGAATTACGTTGATGGATTTCT
GTATACTATACCACTCTTGCATCCTTGGAATGTAACTTAGTTGGTCAGGA
TAGAAGAATGCTAATTGATCCACTCCTATCTCCTTGTACTAATGTCCAAT
CCAATGTTGATCATGGATTCTCTTTATAATTCCAGAGACAGCGAAACTTA
TTGTGGGTGAAAATCCTCGAATACATGGGCACAGGCCAAATATTCCTGAA
TATAACAGCAACGGTCCGTGCTGTATGATCCACCATTGACCATTATGGAT
CCCATATAATTGCCCCAGCTTTCCATCACGTCATATACTCTCTCCATTCC
TATATATACCTTTCCTCCCCATATTGCCCTATATCATTTTTATTTTTCCC
TTTCTCTTTTTTCTCATTTATCATTTCCCACTTATCATGCAATTTACTAC
CGTCTCCTTTTTTATTATCCCCCCTCCCCTTTCCCCTTTCGCGTTTCTTA
TTCATATTTTCCCATTTCTCCCCCGATTTATCCCTCGCTCTTTTTTTATA
TTTTTTCTGCATTCATTGTTCCCCCATTCCTTATTTTTTTCTTTGTCCCT
ATATTTTC
CAATGATAGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCATGGCCCCCTATGGCCCATTTT
CCCCCCACATCTAGCCTGTGGGATGCTCCCAGGTAGAATTTGGAAGAATT
AGGATTCCTACAGAGATTTGGGGTGAATTGGTAGGGTCCACCTTTGCCTG
GAGCTCCTGTAGGTCCTCCACCTTGTCCTTCCTGAACTCCCTCATCACTT
TGATACCAGCACCCCACTACAGCTGCTGTGCAGGCTGTAGTTACAACCTA
GTGTGAAGTTCCTGGTGTAGTGAGCCCCTGAACCTTGTGCCTTCACAAAG
TCCATACCACCTCAGGAAACATGATAGAAGGGGGTCTAGAGCCTTCTCTA
GAGCCTTCACCATATCCTCTGCCACAGATCCTATAACATGACATTCCTTG
GGTCTTAGAAGTGCACTGAAATGGAAATAGCCCCAGAGAGCAGAGTTGCA
GAGGGAGAGTTGAGGTCAAGACAGGGTAGCCCAGCCATGCCACTGCTTGG
GGGACAGTTCTAGATAGGATGGTTTCCCACAGGCCCCACAGTATACTTCC
TCCTCCTAGTGCTCCTGACTCTGCATTTCTGTTCACAGGTTGATGTCAGT
GGAAGAAGAACTGAAGAAGGATCATGCAGAGATGCAAGCAGCTGTAGATT
CCAAACAGAAGATCATCGATGCCCATGTTGGCGCTCTGGCTATAGTGTTA
CAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_g11.g1 MSMg01no533_g11.g1 CHROMAT_FILE:
MSMg01no533_g11.g1 PHD_FILE: MSMg01no533_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:36 2005
         (585 letters)



>mm_chr2_35582183_35583167
          Length = 985

 Score = 1123 bits (581), Expect = 0.0
 Identities = 584/585 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatggccccctatggcccattttccccccacatctagcctgtgggatgctcccaggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatggccccctatggcccattttccccccacatctagcctgtgggatgctcccaggta 260

                                                                       
Query: 61  gaatttggaagaattaggattcctacagagatttggggtgaattggtagggtccaccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatttggaagaattaggattcctacagagatttggggtgaattggtagggtccaccttt 320

                                                                       
Query: 121 gcctggagctcctgtaggtcctccaccttgtccttcctgaactccctcatcactttgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctggagctcctgtaggtcctccaccttgtccttcctgaactccctcatcactttgata 380

                                                                       
Query: 181 ccagcaccccactacagctgctgtgcaggctgtagttacaacctagtgtgaagttcctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagcaccccactacagctgctgtgcaggctgtagttacaacctagtgtgaagttcctgg 440

                                                                       
Query: 241 tgtagtgagcccctgaaccttgtgccttcacaaagtccataccacctcaggaaacatgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtagtgagcccctgaaccttgtgccttcacaaagtccataccacctcaggaaacatgat 500

                                                                       
Query: 301 agaagggggtctagagccttctctagagccttcaccatatcctctgccacagatcctata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaagggggtctagagccttctctagagccttcaccatatcctctgccacagatcctata 560

                                                                       
Query: 361 acatgacattccttgggtcttagaagtgcactgaaatggaaatagccccagagagcagag 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 acatgacattccttgggtcttagaagtgcactggaatggaaatagccccagagagcagag 620

                                                                       
Query: 421 ttgcagagggagagttgaggtcaagacagggtagcccagccatgccactgcttgggggac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgcagagggagagttgaggtcaagacagggtagcccagccatgccactgcttgggggac 680

                                                                       
Query: 481 agttctagataggatggtttcccacaggccccacagtatacttcctcctcctagtgctcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agttctagataggatggtttcccacaggccccacagtatacttcctcctcctagtgctcc 740

                                                        
Query: 541 tgactctgcatttctgttcacaggttgatgtcagtggaagaagaa 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgactctgcatttctgttcacaggttgatgtcagtggaagaagaa 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)