BAC Information

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BAC

Clone NameMSMg01-533I03
Chromosome2 (Build37)
Map Location 43,290,401 - 43,290,925
singlet/doubletsinglet
Overlap genenone
Upstream geneLrp1b, LOC100041228
Downstream geneLOC100041245, Kynu, Arhgap15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533I03.T7 (MSMg01no533_i03.b1)MSMg01-533I03.TJ (MSMg01no533_i03.g1)
ACCAG601413AG601414
length758746
length of high quality
(start - end)
392 (57 - 448)525 (78 - 602)
definitionCHROMAT_FILE: MSMg01no533_i03.b1 PHD_FILE: MSMg01no533_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:44 2005CHROMAT_FILE: MSMg01no533_i03.g1 PHD_FILE: MSMg01no533_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCGCAAGAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAAGGCCCATATCCAAACATGATAAAAGCAATCTA
CAGCAAACCAGTAGCCAACATCAAAGTAAATGGAAAGAAGCTGGAAGCAA
TCCCACTAAAGTCAGGGAAAGACAAGGTTGCCCACTTTCTCCCTACCTTT
TCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAG
ATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGC
AGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGCCA
GCAGAGTCTTGCCCAACACCTGCAAGGGCCCACACGGGACTCCCCACAGG
ATCCTCAAACCTCTGGTGAGTGGAACACAGCGCCCGCCCCAATCTAATCG
CTTGGAACCTGAGACTGCGGTACCTAGGGAAGCAGGCTACCCATCCCTGA
TCCGGGGCACAAGCTCCTTCATTTCCACTTGAGTTCTGGGCTACCTTGTC
TGCTCAGTTTCGGCCAACACCTTGCGAGTGCACACACTGGCACTTCCTCT
ATGGTTCTCCCCCATCCCTCGGTGGAGTTTCACATTAGTGCCTGCTCCTT
ACCCAAATTCGGCGCGGAATTTTTACCACCGTCTTGTTTTTTTTTTTTAT
TTAACGTTTACTTCTGCCAACAGATTCTAGGATTTTTTTTATCCCCGCCT
CTCCTGCN
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTAAAACACTCAGTGCTGCAT
GTTCAGCAAACTGAAGTTAGAAAGGAAACATTTTATGTCAAAGAATATAT
AGGCACTGACAGTACAACGAAAAACTGTTTTCACAACCTGCTTTCATTAC
AGACACAGCAGTTGTCTCACCAGGCTCATGATCGTCTAGGGACTATGGTC
GTCATGGGGAGCATCTTGTAACCTGTGTTGGTACTTGAATTGGGTTATCC
ACAATTCTTCTTCTAACTATGCAGTTGGTGTTCAGTTCCTTTACCTGCAT
GTACTTACTATATTAGCACGCACTATATAAGCTCCTTGCTCAGTAATGCA
TCCAAAAGCCATGGATCTATACCTACATCTTTCTCAGAACAATGACCTAA
TTTTCTTCATTTCTAACAAAAATCAAACTTTGTTTCTACTCAAACACATT
CTAATATACAAATAAGAAAGAGTTGAAAGGCCAGTCCAGGATGACCTGAT
TTTTAAAATGTATGCACAGGAAGACAAAAACCATATCATCAAATGGACTT
TTAAGGAGAATATTCTATATTTTATGAACATGTAAAATGGTACATATACT
AACCAAAATCAGGTCCATTTTGGGAGGGCATATGAGCAGTATGGAAAAAT
GATTTATTGACTATTTTCTCATCCAAACAGAGTATCTCCTCACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_i03.g1 MSMg01no533_i03.g1 CHROMAT_FILE:
MSMg01no533_i03.g1 PHD_FILE: MSMg01no533_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:44 2005
         (525 letters)



>mm_chr2_43290201_43291125
          Length = 925

 Score =  977 bits (505), Expect = 0.0
 Identities = 520/525 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtaaaacactcagtgctgcatgttcagcaaactgaagttagaaaggaaacattttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tggtaaaacactcagtgctgcatgttcagcaaactgaagttagaaaggaaacattttatg 666

                                                                       
Query: 61  tcaaagaatatataggcactgacagtacaacgaaaaactgttttcacaacctgctttcat 120
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 665 tcaaagaatatataggcactgacagttcaacgaaaaactgttttcacaacctgcttccat 606

                                                                       
Query: 121 tacagacacagcagttgtctcaccaggctcatgatcgtctagggactatggtcgtcatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tacagacacagcagttgtctcaccaggctcatgatcgtctagggactatggtcgtcatgg 546

                                                                       
Query: 181 ggagcatcttgtaacctgtgttggtacttgaattgggttatccacaattcttcttctaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ggagcatcttgtaacctgtgttggtacttgaattgggttatccacaattcttcttctaac 486

                                                                       
Query: 241 tatgcagttggtgttcagttcctttacctgcatgtacttactatattagcacgcactata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tatgcagttggtgttcagttcctttacctgcatgtacttactatattagcacgcactata 426

                                                                       
Query: 301 taagctccttgctcagtaatgcatccaaaagccatggatctatacctacatctttctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 425 taagctccttgctcagtaatgcatccaaaagccatggatctatacctacatctttcttag 366

                                                                       
Query: 361 aacaatgacctaattttcttcatttctaacaaaaatcaaactttgtttctactcaaacac 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aacaatgacctaattttcatcatttctaacaaaaatcaaactttgtttctactcaaacac 306

                                                                       
Query: 421 attctaatatacaaataagaaagagttgaaaggccagtccaggatgacctgatttttaaa 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 attctaatatacaaatgagaaagagttgaaaggccagtccaggatgacctgatttttaaa 246

                                                        
Query: 481 atgtatgcacaggaagacaaaaaccatatcatcaaatggactttt 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atgtatgcacaggaagacaaaaaccatatcatcaaatggactttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)