Query= MSMg01no533_j05.b1 MSMg01no533_j05.b1 CHROMAT_FILE:
MSMg01no533_j05.b1 PHD_FILE: MSMg01no533_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:49 2005
(317 letters)
>mm_chr2_94067594_94068310
Length = 717
Score = 520 bits (269), Expect = e-152
Identities = 298/313 (95%), Gaps = 10/313 (3%)
Strand = Plus / Plus
Query: 5 gaattccacagggataaccatcattttttaatgcaaacacagaaaaagcagaggttaggg 64
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattccacagggcgaaccatca-tttttaatgcaaacacagaaaaagcagaggttaggg 273
Query: 65 ggttaaggtttttgtttcttgttgtttggttgttttgttttgttttgttttgttttgttt 124
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ggttggggtttttgtttcttgttgtttggttgttttgttttgttttgttttgttttgttt 333
Query: 125 tgttttgttttgttttgtttgacagtgagaaccacctagctagatataggcagtgctagc 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgttttgt---------tttgacagtgagaaccacctagctagatataggcagtgctagc 384
Query: 185 tcttaataggccaacacactaaccagatcttacaacagcaagttctgagttcaatgctat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttaataggccaacacactaaccagatcttacaacagcaagttctgagttcaatgctat 444
Query: 245 tgcattagtacaattaaaaagaaaaagaacctttgattccagcactctggaggaataggc 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 tgcattagtacaattaaaaagaaaaagagcctttgattccagcactctggaggaataggc 504
Query: 305 aggctgatctctg 317
|||||||||||||
Sbjct: 505 aggctgatctctg 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_j05.g1 MSMg01no533_j05.g1 CHROMAT_FILE:
MSMg01no533_j05.g1 PHD_FILE: MSMg01no533_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:49 2005
(662 letters)
>mm_chr2_94199051_94200112
Length = 1062
Score = 1083 bits (560), Expect = 0.0
Identities = 579/590 (98%), Gaps = 10/590 (1%)
Strand = Plus / Minus
Query: 81 gatcatcaaaccgctgatttcatcagcagataggctttttcccatgatcgatgagttgag 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 gatcatcaaaccgctgatttcatcagcagataggctttttcccatgatcgatgagttgag 1003
Query: 141 tacacacagactaaaaggcatcagaacgtacaagcctagatttggacttgagggtactga 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 tacacacagactaaaaggcatcagaacgtacaagcctagatttggacttgagggtactga 943
Query: 201 ccgtaaagctcgcactctttttttttttttaaagatttatttattgttatatgtaaacac 260
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 ccgtaaagctcgcactc--tttttttttttaaagatttatttattgttatatgtaaacac 885
Query: 261 tatagctgtcttcagacagaccagagaacagagaagggtgtcagatctcattatggatgg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 tatagctgtcttcagacagaccagagaacagagaagggtgtcagatctcattatggatgg 825
Query: 321 ttgtgagccaccatg-------tgggatttgaactcgggacctttggaaaagcagtcagt 373
||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ttgtgagccaccatgtggttgctgggatttgaactcgggacctttggaaaagcagtcagt 765
Query: 374 gctcttaaccgctgagccatctctccagccccaagctcgcactcttttaatgcccctaaa 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gctcttaaccgctgagccatctctccagccccaagctcgcactcttttaatgcccctaaa 705
Query: 434 ctaacacttcataaaaccaggttgcttattttaaaatgcaacttctttgttttaacattt 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ctaacacttcataaaaccaggttgcttattttaaaatgcaacttctttgttttaacattt 645
Query: 494 cttagtcttttattttaagaatgtttggttttctatgttctcactgtgatagttcaaact 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 cttagtcttttattttaagaatgtttggttttctatgttctcactgtgatagttcaaact 585
Query: 554 ggcctcaaagctcttgatggtcctctgcctctcaagagctggg-tcacaggcatggacca 612
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 584 ggcctcaaagctcttggtggtcctctgcctctcaagagctgggatcacaggcatggacca 525
Query: 613 catgatccaggttaggagcatgaactgatgctagactaagtcaaggaagc 662
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 catgatccaggttaggagcatgaactgatgctagactaagtcaaggaagc 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
