Query= MSMg01no534_a20.b1 MSMg01no534_a20.b1 CHROMAT_FILE:
MSMg01no534_a20.b1 PHD_FILE: MSMg01no534_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:25 2005
(543 letters)
>mm_chr2_159564764_159565706
Length = 943
Score = 903 bits (467), Expect = 0.0
Identities = 520/553 (94%), Gaps = 28/553 (5%)
Strand = Plus / Plus
Query: 9 tctgtcctgtcgatttcaaaa-ctgtgtgtgtgcacatgtgtgtgggtgtgtgaaaatgt 67
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tctgtcctgtcgatttcaaaaactgtgtgtgtgcacatgtgtgtgggtgtgtgaaaatgt 270
Query: 68 gtggaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacctgtgtgtgtgcacct 127
||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 271 gtg----tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg------tgtgtgtgcacct 320
Query: 128 gtgtgtgtatgccatggcacatgtgtgaagacaagatgaaagctttgggcattagtccat 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgtgtatgccatggcacatgtgtgaagacaagatgaaagctttgggcattagtccat 380
Query: 188 gccttccactttgtttgagacagt-------tcactgatgttcttgccagggtatctgcc 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 gccttccactttgtttgagacagtctcttgttcactgatgttcttgccagggtatctgcc 440
Query: 241 ttttgtactaatgataccatcctgtttccatctctcctcttactagtgaggtgctaaagt 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 ttttgtactaatgatatcatcctgtttccatctctcctcttactagtgaggtgctaaggt 500
Query: 301 gctaaggtagcactattgggcaagtgtttttccttactgaaccctctatggggatttatt 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gataaggtagcactattgggcaagtgtttttccttactgaaccctctatggggatttatt 560
Query: 361 tttattttgaaacagactacatctattgatacctcttgctttctcttgttttgtttt--- 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttattttgaaacagactacatctattgatacctcttgctttctcttgttttgttttgtt 620
Query: 418 -------tttatgcaactaattttctttaatttttcttactacatttatgcatttatttt 470
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtttttttatgcaactaattttcttgaatttttcttactacatttatgcatttatttt 680
Query: 471 gggaggatgcctatcaatgtcaaaggacatcttgtgggatatggtttttcaccatgtggg 530
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 gggaggatgcctatcaatgtcaaaggacatcttgtgggatctggtttttcaccatgtggg 740
Query: 531 gcctggggataga 543
|||||||||||||
Sbjct: 741 gcctggggataga 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_a20.g1 MSMg01no534_a20.g1 CHROMAT_FILE:
MSMg01no534_a20.g1 PHD_FILE: MSMg01no534_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:25 2005
(569 letters)
>mm_chr2_159748292_159749260
Length = 969
Score = 810 bits (419), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 123 ccttctctctgtttcttggttggcaggaggtggacagcctcttctgctttttacctctac 182
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 969 ccttctctctgtttcttggttggcaggaggtgggcagcctcttctgctttttacctctac 910
Query: 183 caccttggtgttctgctcactgcatcttcacactgatggagccagctagccagcaactaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 caccttggtgttctgctcactgcatcttcacactgatggagccagctagccagcaactaa 850
Query: 243 aaccagtgaaagtgtcagccaaaatacacccttcatcttttaagttactcttctctggtg 302
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 aaccagtgaaagcgtcagccaaaatacacccttcatcttttaagttactcttctctggtg 790
Query: 303 ttttgtcataacgatagaagcctaaagttttctactttaaggtcttccttcatatatgct 362
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ttttgtcataacgatagaaacctaaagttttctactttaaggtcttccttcatatatgct 730
Query: 363 gggctctctacctgctgtcagagaaagcttgcctgggtttctgtccctgctgtctaagag 422
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 729 gggctctctacctgctgtcagagaaagcttgcctgggcttctgtccctgctgtctaagag 670
Query: 423 tatatgatgtctgctgagaatgtctccatctccaaaattgaattcctggatagaggacat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tatatgatgtctgctgagaatgtctccatctccaaaattgaattcctggatagaggacat 610
Query: 483 gaccttcaaactctgcaggtagcaagatatcgaaatgaaattttcacatagcagtagcct 542
|||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 609 gacctttaaactctgcaggtaacaagatatcgaaatgaaaatttcacatagcagtagcct 550
Query: 543 ggaaagctaaggttttatgttttattc 569
|||||||||||||||||||||||||||
Sbjct: 549 ggaaagctaaggttttatgttttattc 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|