BAC Information

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BAC

Clone NameMSMg01-534A20
Chromosome2 (Build37)
Map Location 159,564,974 - 159,749,260
singlet/doubletdoublet
Overlap geneLOC100043689
Upstream genePpp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneGm826, Mafb, LOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534A20.T7 (MSMg01no534_a20.b1)MSMg01-534A20.TJ (MSMg01no534_a20.g1)
ACCAG601829AG601830
length775765
length of high quality
(start - end)
543 (38 - 580)569 (68 - 636)
definitionCHROMAT_FILE: MSMg01no534_a20.b1 PHD_FILE: MSMg01no534_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:25 2005CHROMAT_FILE: MSMg01no534_a20.g1 PHD_FILE: MSMg01no534_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,564,974 - 159,565,516)(159,748,814 - 159,749,260)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGT
CCTGTCGATTTCAAAACTGTGTGTGTGCACATGTGTGTGGGTGTGTGAAA
ATGTGTGGAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACCT
GTGTGTGTGCACCTGTGTGTGTATGCCATGGCACATGTGTGAAGACAAGA
TGAAAGCTTTGGGCATTAGTCCATGCCTTCCACTTTGTTTGAGACAGTTC
ACTGATGTTCTTGCCAGGGTATCTGCCTTTTGTACTAATGATACCATCCT
GTTTCCATCTCTCCTCTTACTAGTGAGGTGCTAAAGTGCTAAGGTAGCAC
TATTGGGCAAGTGTTTTTCCTTACTGAACCCTCTATGGGGATTTATTTTT
ATTTTGAAACAGACTACATCTATTGATACCTCTTGCTTTCTCTTGTTTTG
TTTTTTTATGCAACTAATTTTCTTTAATTTTTCTTACTACATTTATGCAT
TTATTTTGGGAGGATGCCTATCAATGTCAAAGGACATCTTGTGGGATATG
GTTTTTCACCATGTGGGGCCTGGGGATAGAACTCAGGTCATCAGACATGG
TTGGCAGGCATCTTTACCCAGTGAGTCATCTCACTGGCCCTCAATTTCTG
TTACAAATGTTTGTTACAGAAATCATTTCCTATCTTTGGAATGTTTATGT
TCATTTGTTAAGATGTACTAAAGAAATGCCTTAGGGGTTCAGAACTAGTG
GTAGGGAAGGACTCACATCTGCATC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATGATCACTCTGCTATAACATTATTGGAAAGTA
GTGAGACTTTGGAGGATGTAGCCTTATTGGAGGAAGCTGGTCGTGTGGAA
GGATGTGTGCTGGAAGTTGTATCCCATCCAAGGACTCTTCCTTCTCTCTG
TTTCTTGGTTGGCAGGAGGTGGACAGCCTCTTCTGCTTTTTACCTCTACC
ACCTTGGTGTTCTGCTCACTGCATCTTCACACTGATGGAGCCAGCTAGCC
AGCAACTAAAACCAGTGAAAGTGTCAGCCAAAATACACCCTTCATCTTTT
AAGTTACTCTTCTCTGGTGTTTTGTCATAACGATAGAAGCCTAAAGTTTT
CTACTTTAAGGTCTTCCTTCATATATGCTGGGCTCTCTACCTGCTGTCAG
AGAAAGCTTGCCTGGGTTTCTGTCCCTGCTGTCTAAGAGTATATGATGTC
TGCTGAGAATGTCTCCATCTCCAAAATTGAATTCCTGGATAGAGGACATG
ACCTTCAAACTCTGCAGGTAGCAAGATATCGAAATGAAATTTTCACATAG
CAGTAGCCTGGAAAGCTAAGGTTTTATGTTTTATTCAGTATTCCAAAAAG
AGTTGCAGATTGTTTCATATGTTAAGCTTTCTGAACAACAGTGGCGAACA
GAAGATGATACAGGCACAGTTCTTTTGTCAGATTCAGTACAAGGGGTGAC
AGCCTTTAAAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_a20.b1 MSMg01no534_a20.b1 CHROMAT_FILE:
MSMg01no534_a20.b1 PHD_FILE: MSMg01no534_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:25 2005
         (543 letters)



>mm_chr2_159564764_159565706
          Length = 943

 Score =  903 bits (467), Expect = 0.0
 Identities = 520/553 (94%), Gaps = 28/553 (5%)
 Strand = Plus / Plus

                                                                       
Query: 9   tctgtcctgtcgatttcaaaa-ctgtgtgtgtgcacatgtgtgtgggtgtgtgaaaatgt 67
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tctgtcctgtcgatttcaaaaactgtgtgtgtgcacatgtgtgtgggtgtgtgaaaatgt 270

                                                                       
Query: 68  gtggaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacctgtgtgtgtgcacct 127
           |||    ||||||||||||||||||||||||||||||||||      |||||||||||||
Sbjct: 271 gtg----tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg------tgtgtgtgcacct 320

                                                                       
Query: 128 gtgtgtgtatgccatggcacatgtgtgaagacaagatgaaagctttgggcattagtccat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgtgtatgccatggcacatgtgtgaagacaagatgaaagctttgggcattagtccat 380

                                                                       
Query: 188 gccttccactttgtttgagacagt-------tcactgatgttcttgccagggtatctgcc 240
           ||||||||||||||||||||||||       |||||||||||||||||||||||||||||
Sbjct: 381 gccttccactttgtttgagacagtctcttgttcactgatgttcttgccagggtatctgcc 440

                                                                       
Query: 241 ttttgtactaatgataccatcctgtttccatctctcctcttactagtgaggtgctaaagt 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 ttttgtactaatgatatcatcctgtttccatctctcctcttactagtgaggtgctaaggt 500

                                                                       
Query: 301 gctaaggtagcactattgggcaagtgtttttccttactgaaccctctatggggatttatt 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gataaggtagcactattgggcaagtgtttttccttactgaaccctctatggggatttatt 560

                                                                       
Query: 361 tttattttgaaacagactacatctattgatacctcttgctttctcttgttttgtttt--- 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 561 tttattttgaaacagactacatctattgatacctcttgctttctcttgttttgttttgtt 620

                                                                       
Query: 418 -------tttatgcaactaattttctttaatttttcttactacatttatgcatttatttt 470
                  |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtttttttatgcaactaattttcttgaatttttcttactacatttatgcatttatttt 680

                                                                       
Query: 471 gggaggatgcctatcaatgtcaaaggacatcttgtgggatatggtttttcaccatgtggg 530
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 gggaggatgcctatcaatgtcaaaggacatcttgtgggatctggtttttcaccatgtggg 740

                        
Query: 531 gcctggggataga 543
           |||||||||||||
Sbjct: 741 gcctggggataga 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no534_a20.g1 MSMg01no534_a20.g1 CHROMAT_FILE:
MSMg01no534_a20.g1 PHD_FILE: MSMg01no534_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:25 2005
         (569 letters)



>mm_chr2_159748292_159749260
          Length = 969

 Score =  810 bits (419), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 123 ccttctctctgtttcttggttggcaggaggtggacagcctcttctgctttttacctctac 182
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 969 ccttctctctgtttcttggttggcaggaggtgggcagcctcttctgctttttacctctac 910

                                                                       
Query: 183 caccttggtgttctgctcactgcatcttcacactgatggagccagctagccagcaactaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 caccttggtgttctgctcactgcatcttcacactgatggagccagctagccagcaactaa 850

                                                                       
Query: 243 aaccagtgaaagtgtcagccaaaatacacccttcatcttttaagttactcttctctggtg 302
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 aaccagtgaaagcgtcagccaaaatacacccttcatcttttaagttactcttctctggtg 790

                                                                       
Query: 303 ttttgtcataacgatagaagcctaaagttttctactttaaggtcttccttcatatatgct 362
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ttttgtcataacgatagaaacctaaagttttctactttaaggtcttccttcatatatgct 730

                                                                       
Query: 363 gggctctctacctgctgtcagagaaagcttgcctgggtttctgtccctgctgtctaagag 422
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 729 gggctctctacctgctgtcagagaaagcttgcctgggcttctgtccctgctgtctaagag 670

                                                                       
Query: 423 tatatgatgtctgctgagaatgtctccatctccaaaattgaattcctggatagaggacat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tatatgatgtctgctgagaatgtctccatctccaaaattgaattcctggatagaggacat 610

                                                                       
Query: 483 gaccttcaaactctgcaggtagcaagatatcgaaatgaaattttcacatagcagtagcct 542
           |||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 609 gacctttaaactctgcaggtaacaagatatcgaaatgaaaatttcacatagcagtagcct 550

                                      
Query: 543 ggaaagctaaggttttatgttttattc 569
           |||||||||||||||||||||||||||
Sbjct: 549 ggaaagctaaggttttatgttttattc 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)