Query= MSMg01no534_a24.b1 MSMg01no534_a24.b1 CHROMAT_FILE:
MSMg01no534_a24.b1 PHD_FILE: MSMg01no534_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:26 2005
(606 letters)
>mm_chr2_153206271_153207276
Length = 1006
Score = 1149 bits (594), Expect = 0.0
Identities = 601/604 (99%), Gaps = 2/604 (0%)
Strand = Plus / Minus
Query: 5 gaattccaggactgtcaggtctagacagagaaatcctgtttcaaaaaaacccacaaaaca 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 gaattccaggacagtcaggtctagacagagaaatcctgtttcaaaaaaacccacaaaaca 940
Query: 65 ccaccaccactacaacaaaaaggttatttttattttcaattacatgtgtgtttgtttatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 ccaccaccactacaacaaaaaggttatttttattttcaattacatgtgtgtttgtttatg 880
Query: 125 tgagtacagtgcccacgacgagaggcaagaggaaggtgtcagatcccttgacctgtactt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 tgagtacagtgcccacgacgagaggcaagaggaaggtgtcagatcccttgacctgtactt 820
Query: 185 agagtcagtaagaactggggacctaactcaggccctctgcaataatagaatgcattctta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 agagtcagtaagaactggggacctaactcaggccctctgcaataatagaatgcattctta 760
Query: 245 aacttttctctagtcccagcctctacttaccttcctatctacctatcacctacctgatct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aacttttctctagtcccagcctctacttaccttcctatctacctatcacctacctgatct 700
Query: 305 atttattttaaggaacaaaaatcattcctacaacaacataattacatttgtttccatgtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 atttattttaaggaacaaaaatcattcctacaacaacataattacatttgtttccatgtt 640
Query: 365 aagtcagggtagatctctctatgtataccaggttagcttcagcccttgaagaattgggat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aagtcagggtagatctctctatgtataccaggttagcttcagcccttgaagaattgggat 580
Query: 425 tacaggagtccaccttcactctcagcctacaagtgaatcataaaagtattattttaagta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tacaggagtccaccttcactctcagcctacaagtgaatcataaaagtattattttaagta 520
Query: 485 agaaaccagacacaaagcctaacattagtaaatttagagaatagtttt--gagagagaga 542
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 519 agaaaccagacacaaagcctaacattagtaaatttagagaatagttttgagagagagaga 460
Query: 543 gagataactcagtaagtagaggcactttccaaccaaacatggcaacctgagtttaattcc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gagataactcagtaagtagaggcactttccaaccaaacatggcaacctgagtttaattcc 400
Query: 603 cagg 606
||||
Sbjct: 399 cagg 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_a24.g1 MSMg01no534_a24.g1 CHROMAT_FILE:
MSMg01no534_a24.g1 PHD_FILE: MSMg01no534_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:26 2005
(334 letters)
>mm_chr2_152996630_152997363
Length = 734
Score = 584 bits (302), Expect = e-171
Identities = 328/340 (96%), Gaps = 7/340 (2%)
Strand = Plus / Plus
Query: 1 actctagcctgtcagtccttgagcttggtgatctcctccctcagcatttttttttttttt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 196 actctagcctgtcagtccttgagcttggtgatctcctccctcagc-tttttttttttttt 254
Query: 61 ttggtttttcgagacagggtt------tctctgtatagccctggctgtcctggaactcac 114
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 255 ttggtttttcgagacagggttagggtttctctgtatagccctggctgtcctggaactcac 314
Query: 115 tctgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccgagtgctg 174
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tctgtagaccagactggcctcgaactcagaaatccacctgcctctgcctcccgagtgctg 374
Query: 175 ggattaaaggcgtgcaccaccacgcccagctctacctcaactttttaggtaactaaatta 234
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggattaaaggcgtgtgccaccacgcccagctctacctcaactttttaggtaactaaatta 434
Query: 235 taggcctgtaccatcaagtccaactccatacttttttctttgcttatatatcttacagta 294
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taggcctgcaccatcaagtccaactccatacttttttctttgcttatatatcttacagta 494
Query: 295 gagtttaatttgtaaattagacaccgtaagattgacagag 334
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 495 gagttgaatttgtaaattagacaccgtaagattgacagag 534
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space: 235625
Effective search space used: 235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
