Query= MSMg01no534_g12.b1 MSMg01no534_g12.b1 CHROMAT_FILE:
MSMg01no534_g12.b1 PHD_FILE: MSMg01no534_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:55 2005
(674 letters)
>mm_chr2_167069629_167070701
Length = 1073
Score = 1201 bits (621), Expect = 0.0
Identities = 658/671 (98%), Gaps = 4/671 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatccccagaacctacttggtgaaggacagaagcaacagctgcagttgatctct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatccccagaacctacttggtgaaggacagaagcaacagctgcagttgatctct 264
Query: 65 gagctccacatgacagctgtggatcatgggcaacagcaggcacacctcccacatacactg 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 gagctccacatgacagctgtggatcatgggcaacagcaggcacacctcccacatacgctg 324
Query: 125 acaagcaataaaatacttaaaaaaaaacaaaaaac-aaaaaaaccaagtgacttctagtg 183
|||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||||||
Sbjct: 325 acaagcaataaaatactttaaaaaca--aaaaaacaaaaaaaaccaagtgacttctagtg 382
Query: 184 ttatgtatcaacaacaattacaaaactcttttgaatttcacttcatagctaaacttgtaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttatgtatcaacaacaattacaaaactcttttgaatttcacttcatagctaaacttgtaa 442
Query: 244 gtggctcttggcagcttcaaagatgttacttgtctaattaacacgtgtgtgaaatcatgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtggctcttggcagcttcaaagatgttacttgtctaattaacacgtgtgtgaaatcatgt 502
Query: 304 cttactccaggcaatcagactcaggaaaagtctaagggcttatttggttttggttttcta 363
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cttactccaggcaatctgactcaggaaaagtctaagggcttatttggttttggttttcta 562
Query: 364 ttttgtctctgaatctttcttgtgtgagtatgtgtgcatgtgtgtgtctgtatgtatgtg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttttgtctctgaatctttcttgtgtgagtatgtgtgcatgtgtgtgtctgtatgtatgtg 622
Query: 424 tatttctgtatgtatgtgtatgtgtttagacacacttagaggctaaagttgaagctggcc 483
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 623 tatttctgtatgtctgtgtatgtgtttagatacacttagaggctaaagttgaagctggcc 682
Query: 484 tccacatgtcacatgagtatacatgtgtgagaaagtgtgtggattttcccaagtgcagta 543
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tccacatgtcatatgagtatacatgtgtgagaaagtgtgtggattttcccaagtgcagta 742
Query: 544 cccaagatgtccagaagagagtgctagatctcctgggggggagatgtgagccacctgtgg 603
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 743 cccaagatgtccagaagagagtgctagatctcctgggggg-agatgtgagccacctgagg 801
Query: 604 taggttctagaacccaacctctcggcaaaagcagcacacactctcaaacactaagctctc 663
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 802 taggttctagaacccaacctctcggcaaaagtagcacacactctcaaacactaagctctc 861
Query: 664 tcttggcttac 674
|||||||||||
Sbjct: 862 tcttggcttac 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1073
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1063
Effective search space: 705832
Effective search space used: 705832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_g12.g1 MSMg01no534_g12.g1 CHROMAT_FILE:
MSMg01no534_g12.g1 PHD_FILE: MSMg01no534_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:55 2005
(638 letters)
>mm_chr2_167268405_167269439
Length = 1035
Score = 1094 bits (566), Expect = 0.0
Identities = 616/642 (95%), Gaps = 17/642 (2%)
Strand = Plus / Minus
Query: 11 ttctaggtcaggtggagctaagggggagacaacagttgagaagacatactggggctgggt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 ttctaggtcaggtggagctaagggggagacaacagttgagaagacatactggggctgggt 976
Query: 71 gtgatgagttgtcttttgtttttgttttttataggcttttaataccagcactcaggaagc 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 gtgatgagttgtcttttgtttttgttttttataggcttttaataccagcactcaggaagc 916
Query: 131 agacacacagtgaggtccaggccatccagggccacacagtgagatttttgtctcaaaaaa 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 agacacacagtgaggtccaggccatccagggccacacagtgagatttttgtctcaaaaaa 856
Query: 191 aaaaaa--------------aaaaaaaaaaatacaaatgccatctggctctgtagttggc 236
|||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 855 aaaaaaaaaaaaagaaatagaaaaaaaaaaatacaaatgccatct-gctctgtagttggc 797
Query: 237 caaactgctcacaaccttcagaaagcaggcctggaagctcagcacctgtgcaggctcagc 296
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 796 caaactgctcacaaccttcagaaagcaggcctggaagctcagcacctgcgcaggctcagc 737
Query: 297 atgccagggccaggcctgccccaggaagcaggggctactgcagttaaagggtagcaacct 356
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 at--cagggccaggcctgccccaggaagcaggggctactgcagttaaagggtagcaacct 679
Query: 357 cttggggagtagccacacccccactaggcactgctccaggggagccttaccttgtgcagt 416
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 678 cttggggagtagccacaccccaactagacactgctccaggggagccttaccttgtgcagt 619
Query: 417 gagtatcctgactcaaagatgataggtgggagcaagagaaggaaaaacatgttggggcga 476
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gagtatcctgactcaaagataataggtgggagcaagagaaggaaaaacatgttggggcga 559
Query: 477 aacatttcttcctcctgtaaagtcaaaagggaagatactcaggacgggagtgcggaaccc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aacatttcttcctcctgtaaagtcaaaagggaagatactcaggacgggagtgcggaaccc 499
Query: 537 aggaccttgatttccagaaccacaaagtgaagaaaagtgactcctacaagtcatgcagat 596
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct: 498 aggaccttgatttccagaaccacaaagtgaagaaaagcgactcctataagtcatgcggat 439
Query: 597 gccggcgctgacggacggtgggacgctggagctcctggagaa 638
||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 438 gccggcgctgacggagggtgggacgctggaactcctggagaa 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1035
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1025
Effective search space: 643700
Effective search space used: 643700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|