BAC Information

Click to search

BAC

Clone NameMSMg01-534G12
Chromosome2 (Build37)
Map Location 167,069,833 - 167,269,439
singlet/doubletdoublet
Overlap geneLOC668951, B4galt5, Slc9a8
Upstream geneLOC670775, Ppia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis
Downstream geneSpata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534G12.T7 (MSMg01no534_g12.b1)MSMg01-534G12.TJ (MSMg01no534_g12.g1)
ACCAG602099AG602100
length718718
length of high quality
(start - end)
674 (45 - 718)638 (72 - 709)
definitionCHROMAT_FILE: MSMg01no534_g12.b1 PHD_FILE: MSMg01no534_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:55 2005CHROMAT_FILE: MSMg01no534_g12.g1 PHD_FILE: MSMg01no534_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,069,833 - 167,070,500)(167,268,801 - 167,269,439)
sequence
TCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATCCCCAGAACCTACTTGGTGAAGGACAGAAGCAACAGCTGCAGT
TGATCTCTGAGCTCCACATGACAGCTGTGGATCATGGGCAACAGCAGGCA
CACCTCCCACATACACTGACAAGCAATAAAATACTTAAAAAAAAACAAAA
AACAAAAAAACCAAGTGACTTCTAGTGTTATGTATCAACAACAATTACAA
AACTCTTTTGAATTTCACTTCATAGCTAAACTTGTAAGTGGCTCTTGGCA
GCTTCAAAGATGTTACTTGTCTAATTAACACGTGTGTGAAATCATGTCTT
ACTCCAGGCAATCAGACTCAGGAAAAGTCTAAGGGCTTATTTGGTTTTGG
TTTTCTATTTTGTCTCTGAATCTTTCTTGTGTGAGTATGTGTGCATGTGT
GTGTCTGTATGTATGTGTATTTCTGTATGTATGTGTATGTGTTTAGACAC
ACTTAGAGGCTAAAGTTGAAGCTGGCCTCCACATGTCACATGAGTATACA
TGTGTGAGAAAGTGTGTGGATTTTCCCAAGTGCAGTACCCAAGATGTCCA
GAAGAGAGTGCTAGATCTCCTGGGGGGGAGATGTGAGCCACCTGTGGTAG
GTTCTAGAACCCAACCTCTCGGCAAAAGCAGCACACACTCTCAAACACTA
AGCTCTCTCTTGGCTTAC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTCCTTGTTTCTAGGTCAGGTGGAGCT
AAGGGGGAGACAACAGTTGAGAAGACATACTGGGGCTGGGTGTGATGAGT
TGTCTTTTGTTTTTGTTTTTTATAGGCTTTTAATACCAGCACTCAGGAAG
CAGACACACAGTGAGGTCCAGGCCATCCAGGGCCACACAGTGAGATTTTT
GTCTCAAAAAAAAAAAAAAAAAAAAAAATACAAATGCCATCTGGCTCTGT
AGTTGGCCAAACTGCTCACAACCTTCAGAAAGCAGGCCTGGAAGCTCAGC
ACCTGTGCAGGCTCAGCATGCCAGGGCCAGGCCTGCCCCAGGAAGCAGGG
GCTACTGCAGTTAAAGGGTAGCAACCTCTTGGGGAGTAGCCACACCCCCA
CTAGGCACTGCTCCAGGGGAGCCTTACCTTGTGCAGTGAGTATCCTGACT
CAAAGATGATAGGTGGGAGCAAGAGAAGGAAAAACATGTTGGGGCGAAAC
ATTTCTTCCTCCTGTAAAGTCAAAAGGGAAGATACTCAGGACGGGAGTGC
GGAACCCAGGACCTTGATTTCCAGAACCACAAAGTGAAGAAAAGTGACTC
CTACAAGTCATGCAGATGCCGGCGCTGACGGACGGTGGGACGCTGGAGCT
CCTGGAGAAAAAGGAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_g12.b1 MSMg01no534_g12.b1 CHROMAT_FILE:
MSMg01no534_g12.b1 PHD_FILE: MSMg01no534_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:55 2005
         (674 letters)



>mm_chr2_167069629_167070701
          Length = 1073

 Score = 1201 bits (621), Expect = 0.0
 Identities = 658/671 (98%), Gaps = 4/671 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatccccagaacctacttggtgaaggacagaagcaacagctgcagttgatctct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatccccagaacctacttggtgaaggacagaagcaacagctgcagttgatctct 264

                                                                       
Query: 65  gagctccacatgacagctgtggatcatgggcaacagcaggcacacctcccacatacactg 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 gagctccacatgacagctgtggatcatgggcaacagcaggcacacctcccacatacgctg 324

                                                                       
Query: 125 acaagcaataaaatacttaaaaaaaaacaaaaaac-aaaaaaaccaagtgacttctagtg 183
           |||||||||||||||||| ||||| |  ||||||| ||||||||||||||||||||||||
Sbjct: 325 acaagcaataaaatactttaaaaaca--aaaaaacaaaaaaaaccaagtgacttctagtg 382

                                                                       
Query: 184 ttatgtatcaacaacaattacaaaactcttttgaatttcacttcatagctaaacttgtaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttatgtatcaacaacaattacaaaactcttttgaatttcacttcatagctaaacttgtaa 442

                                                                       
Query: 244 gtggctcttggcagcttcaaagatgttacttgtctaattaacacgtgtgtgaaatcatgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtggctcttggcagcttcaaagatgttacttgtctaattaacacgtgtgtgaaatcatgt 502

                                                                       
Query: 304 cttactccaggcaatcagactcaggaaaagtctaagggcttatttggttttggttttcta 363
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cttactccaggcaatctgactcaggaaaagtctaagggcttatttggttttggttttcta 562

                                                                       
Query: 364 ttttgtctctgaatctttcttgtgtgagtatgtgtgcatgtgtgtgtctgtatgtatgtg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttttgtctctgaatctttcttgtgtgagtatgtgtgcatgtgtgtgtctgtatgtatgtg 622

                                                                       
Query: 424 tatttctgtatgtatgtgtatgtgtttagacacacttagaggctaaagttgaagctggcc 483
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 623 tatttctgtatgtctgtgtatgtgtttagatacacttagaggctaaagttgaagctggcc 682

                                                                       
Query: 484 tccacatgtcacatgagtatacatgtgtgagaaagtgtgtggattttcccaagtgcagta 543
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tccacatgtcatatgagtatacatgtgtgagaaagtgtgtggattttcccaagtgcagta 742

                                                                       
Query: 544 cccaagatgtccagaagagagtgctagatctcctgggggggagatgtgagccacctgtgg 603
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 743 cccaagatgtccagaagagagtgctagatctcctgggggg-agatgtgagccacctgagg 801

                                                                       
Query: 604 taggttctagaacccaacctctcggcaaaagcagcacacactctcaaacactaagctctc 663
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 802 taggttctagaacccaacctctcggcaaaagtagcacacactctcaaacactaagctctc 861

                      
Query: 664 tcttggcttac 674
           |||||||||||
Sbjct: 862 tcttggcttac 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1073
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1063
Effective search space:   705832
Effective search space used:   705832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no534_g12.g1 MSMg01no534_g12.g1 CHROMAT_FILE:
MSMg01no534_g12.g1 PHD_FILE: MSMg01no534_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:55 2005
         (638 letters)



>mm_chr2_167268405_167269439
          Length = 1035

 Score = 1094 bits (566), Expect = 0.0
 Identities = 616/642 (95%), Gaps = 17/642 (2%)
 Strand = Plus / Minus

                                                                        
Query: 11   ttctaggtcaggtggagctaagggggagacaacagttgagaagacatactggggctgggt 70
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 ttctaggtcaggtggagctaagggggagacaacagttgagaagacatactggggctgggt 976

                                                                        
Query: 71   gtgatgagttgtcttttgtttttgttttttataggcttttaataccagcactcaggaagc 130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975  gtgatgagttgtcttttgtttttgttttttataggcttttaataccagcactcaggaagc 916

                                                                        
Query: 131  agacacacagtgaggtccaggccatccagggccacacagtgagatttttgtctcaaaaaa 190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915  agacacacagtgaggtccaggccatccagggccacacagtgagatttttgtctcaaaaaa 856

                                                                        
Query: 191  aaaaaa--------------aaaaaaaaaaatacaaatgccatctggctctgtagttggc 236
            ||||||              ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 855  aaaaaaaaaaaaagaaatagaaaaaaaaaaatacaaatgccatct-gctctgtagttggc 797

                                                                        
Query: 237  caaactgctcacaaccttcagaaagcaggcctggaagctcagcacctgtgcaggctcagc 296
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 796  caaactgctcacaaccttcagaaagcaggcctggaagctcagcacctgcgcaggctcagc 737

                                                                        
Query: 297  atgccagggccaggcctgccccaggaagcaggggctactgcagttaaagggtagcaacct 356
            ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  at--cagggccaggcctgccccaggaagcaggggctactgcagttaaagggtagcaacct 679

                                                                        
Query: 357  cttggggagtagccacacccccactaggcactgctccaggggagccttaccttgtgcagt 416
            ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 678  cttggggagtagccacaccccaactagacactgctccaggggagccttaccttgtgcagt 619

                                                                        
Query: 417  gagtatcctgactcaaagatgataggtgggagcaagagaaggaaaaacatgttggggcga 476
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 618  gagtatcctgactcaaagataataggtgggagcaagagaaggaaaaacatgttggggcga 559

                                                                        
Query: 477  aacatttcttcctcctgtaaagtcaaaagggaagatactcaggacgggagtgcggaaccc 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558  aacatttcttcctcctgtaaagtcaaaagggaagatactcaggacgggagtgcggaaccc 499

                                                                        
Query: 537  aggaccttgatttccagaaccacaaagtgaagaaaagtgactcctacaagtcatgcagat 596
            ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct: 498  aggaccttgatttccagaaccacaaagtgaagaaaagcgactcctataagtcatgcggat 439

                                                      
Query: 597  gccggcgctgacggacggtgggacgctggagctcctggagaa 638
            ||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 438  gccggcgctgacggagggtgggacgctggaactcctggagaa 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1035
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1025
Effective search space:   643700
Effective search space used:   643700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)