Query= MSMg01no534_j08.b1 MSMg01no534_j08.b1 CHROMAT_FILE:
MSMg01no534_j08.b1 PHD_FILE: MSMg01no534_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:09 2005
(655 letters)
>mm_chr2_114083681_114084735
Length = 1055
Score = 1156 bits (598), Expect = 0.0
Identities = 628/638 (98%)
Strand = Plus / Minus
Query: 5 gaattccagcctgagggcaagggaaagctgttgcgggattgtaatcagagctgatgtgat 64
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 638 gaattccagccagagggcaagggaaagctgttgcaggattgtaatcagagctgatgtgat 579
Query: 65 ctgtacagccacagtgtgcagaatgggagccatctgatcaatgagatcgatggggagaat 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 578 ctgtacagccacagtgtgcagagtgggagccatctgatcaatgagatcgatggggagaat 519
Query: 125 gtcatcagaatgggaggcgaaggtggtcggattcagaaaatggaagtggggtagaggggc 184
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 518 gtcatcagaatgggaggcgaaggtggtcagattcagaaaatggcagtggggtagaggggc 459
Query: 185 agcccagaatggatggtgtcaagcgatgcttagcagatagaatcagaaaggctggctggc 244
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggcccagaatggatggtgtcaagagatgcttagcagatagaatcagaaaggctggctggc 399
Query: 245 ttgctgagtatggggaagccactgaggggaaggaatgaatgatgttgaagaatagtagta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttgctgagtatggggaagccactgaggggaaggaatgaatgatgttgaagaatagtagta 339
Query: 305 cgtggagtgagctgccaagcgtcccattacctatacaggagcattaacataggcagaata 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 338 cgtggagtgagctgccaagcgtcccattacctatacaggagcactaacataggcagaata 279
Query: 365 ataatgagctcagtttgagacctcatgcaaggcaagtgtgggacagctgggtgaagatga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ataatgagctcagtttgagacctcatgcaaggcaagtgtgggacagctgggtgaagatga 219
Query: 425 ccggtgttgagaggcttttcctggggaaccgtgaacaaacatctattcaccaaagacatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ccggtgttgagaggcttttcctggggaaccgtgaacaaacatctattcaccaaagacatg 159
Query: 485 gcacctaggacagactgaaaaagtaattccaacctagccttagtgtcccagtgcatttaa 544
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gcacctaggacagtctgaaaaagtaattccaacctagccttagtgtcccagtgcatttaa 99
Query: 545 aaacattgttgactcaaaggcagctgcatcacccaaaagcccaaggcaacctgagagatg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 aaacattgttgactcaaaggcagctgcatcacccaaaagcccaaggcaacctgagagatg 39
Query: 605 actcgtgaaatctgcatccacggaggaacctaccccct 642
|||||||||| |||||||||||||||||||||||||||
Sbjct: 38 actcgtgaaacctgcatccacggaggaacctaccccct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_j08.g1 MSMg01no534_j08.g1 CHROMAT_FILE:
MSMg01no534_j08.g1 PHD_FILE: MSMg01no534_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:09 2005
(580 letters)
>mm_chr2_113908814_113909796
Length = 983
Score = 1062 bits (549), Expect = 0.0
Identities = 572/583 (98%), Gaps = 7/583 (1%)
Strand = Plus / Plus
Query: 1 aacatggatgctaaccacaagagaaaaagatgaggcagaagacaaaggataaacaggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatggatgctaaccacaagagaaaaagatgaggcagaagacaaaggataaacaggaat 260
Query: 61 agaagatggcatagccatctgtcagcctcccagaggacacgctggttttcatttcagtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagatggcatagccatctgtcagcctcccagaggacacgctggttttcatttcagtgt 320
Query: 121 ttgctttctttttcaatgccttactgggcagcatgttgcttagctagcattacttagata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctttctttttcaatgccttactgggcagcatgttgcttagctagcattacttagata 380
Query: 181 caggagtaggacatcaactgataatagttatgtacctcttttatataacttggcctgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggagtaggacatcaactgataatagttatgtacctcttttatataacttggcctgttt 440
Query: 241 acttacagattttaaacaatgttttttt---aaaacagaggtgttatcatgagaaactcc 297
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 acttacagattttaaacaatgttttttttttaaaacagaggtgttatcatgagaaactcc 500
Query: 298 acatgatgaaaaaaatacagatgtttttcttctataatgcttactcttcagaagcaaggt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgatgaaaaaaatacagatgtttttcttctataatgcttactcttcagaagcaaggt 560
Query: 358 aaaagcttctgtcgaccaaggccctaggggacgtgaagatgtttggttctagcagacaat 417
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 aaaagcttctgtcgaccaaggccctagaggacgtgaagatgtttggttctagcagacaat 620
Query: 418 atgcaggatgactttcagtttgtctttagtgaagtgccagactatcaacatcaaatagag 477
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 atgcaggatgactttcagtttgtctttagtgaagtgccagactatcgacatcaaatagag 680
Query: 478 caaggcggtacatcctttaatacaattaatggtagtctcttctagagacagcaatccaca 537
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 caaggcggtgcatcctttaatacagttaatggtagtctcttctagagacagcaatccaca 740
Query: 538 ggtgctggaaaaaaggggtaaacagacagacctgcagaatgtg 580
||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 ggtgctggaaaaaaggggtaaacagac----ctgcagaatgtg 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 983
Length adjustment: 10
Effective length of query: 570
Effective length of database: 973
Effective search space: 554610
Effective search space used: 554610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
