TATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGGACCTGGAGAAATAGTCTTTCAAAGGGAAAAGCACACTAATTAA
TCCAATACCAAATGGTCTATTTGAAAGACAAACAAATAACATTATAAAGA
CTGAGCAAGTTTCATTTAGGAATATATACATATTTATTTCCTATATATGC
ATATACATGAAAAATAACAATTTATAAAAAAAAGAGGCTATGAACGAGTA
AAGAGAAGTATATGGAAGTTGGGAGGAAGGAAGGGAAATTATAAAATTAT
AACAGTATAATATCCAAATATTTAAGAAATCATTTAAATTAATAAATAAA
GTAACAGGACAGGTTCTGAATCAAGCATATCTACTTTTGATTTTTTTTAT
AATATGGAACAATAGCTTATAATCCAACTGTTTTTAAAACTTTATATAGA
GATAAAAGAGAAATAAGATGTAAAACTGACAGCATAATGTTGAATGACTT
ACATACCAGACACCAAGACTTTCTATAAAGCTGCAACAGTCAAGGACGTG
AGTTATTGGCAAAAGTACAAACTAGATCAATCACGGAGAATGGGGAGCAC
ATAAACATGTCAGCAACCTTCCACACAGAAGCAAAGCCAACATGAGAGAC
AGGAGCAAACAGAAATGACAACTTTAAAAAAAAAAAAACTGTGCTGGGAC
AACAGGATATTTACAGTTGAAAAGAAAAAATGTTGCATN

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGCAAATTCTTTGTAAAATTTAGAGG
TCGATCCAGTATTTACTGATAATGAGAAGCTTCAAGGATTTCAATACCCT
TCACTTAAAGACAATATAAAACTTATGCGTACTTTACAGACTATAAGAAA
TATATTTATGTACAATACAGTAGGAACAATATTGAAGTCTTATCCTATAT
TTCATTACATTTTCTTAGATTCTGTGATAATTGCTATATTACTGTAACCA
CTAACTGAGGAATTTAAAATTTCAACAGAATTTCCTTAATTTTAAATTAT
AGAAATGTTAACATGCCTTTCATGTTACAATATAAAATAACAGATTTTTA
AAGGAAAAATTCATTCGTCGTTATTTTCATTTTCTTAAAAGACTAAATAA
AATAGAAATAAAAAGTATACCTTCAGTTGTCCAATAATATCAAAATACTG
TAAATTGCTCTTTTATAATAGAGTTTTTAACTTCTCATTCATAAGCGAAG
ACATTTGTGAAGTAGCATGTTCTTGTTGAAATACACACACACACAAGCAT
GCGTATATATAATATATATATATGTATATATATATATATATATATATGAT
GCATATATATGATGGTGCAAAGCTTAATACTAATTTAAAATATCTGTTTT
ATTGCCTTTAATTAATATTTCCAAATGTTGAGAN

Query= MSMg01no534_m22.g1 MSMg01no534_m22.g1 CHROMAT_FILE:
MSMg01no534_m22.g1 PHD_FILE: MSMg01no534_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:26 2005
         (653 letters)



>mm_chr2_42437432_42438484
          Length = 1053

 Score = 1127 bits (583), Expect = 0.0
 Identities = 638/665 (95%), Gaps = 16/665 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcaaattctttgtaaaatttagaggtcgatccagtatttactgataatgagaagctt 60
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 885 attgcaaattctttgtaaaatttagaggtagatccagtatttactgataatgaggagctt 826

                                                                       
Query: 61  caaggatttcaatacccttcacttaaagacaatataaaacttatgcgtactttacagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 caaggatttcaatacccttcacttaaagacaatataaaacttatgcgtactttacagact 766

                                                                       
Query: 121 ataagaaatatatttatgtaca------------atacagtaggaacaatattgaagtct 168
           ||||||||||||||||||||||            ||||||||||||||||||||||||||
Sbjct: 765 ataagaaatatatttatgtacaataaaaacatccatacagtaggaacaatattgaagtct 706

                                                                       
Query: 169 tatcctatatttcattacattttcttagattctgtgataattgctatattactgtaacca 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tatcctatatttcattacattttcttagattctgtgataattgctatattactgtaacca 646

                                                                       
Query: 229 ctaactgaggaatttaaaatttcaacagaatttccttaattttaaattatagaaatgtta 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ctaactgaggaatttaaaatttcaacagaatttccttaattttaaattatagaaatgtta 586

                                                                       
Query: 289 acatgcctttcatgttacaatataaaataacagatttttaaaggaaaaattcattcgtcg 348
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| 
Sbjct: 585 acatgcctttcatgttacaatatgtaataacagatttttaaaggaaaaattcattcgtca 526

                                                                       
Query: 349 ttattttcattttcttaaaagactaaataaaatagaaataaaaagtataccttcagttgt 408
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttattttcattttcttgaaagactaaataaaatagaaataaaaagtataccttcagttgt 466

                                                                       
Query: 409 ccaataatatcaaaatactgtaaattgctcttttataatagagtttttaacttctcattc 468
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 465 ccaataatatcaaaatactgtaaaatgctcttttataatagagtttttaacttcacattc 406

                                                                       
Query: 469 ataagcgaagacatttgtgaagtagcatgttcttgttgaaatacacacacacacaagcat 528
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ataagcgaagatatttgtgaagtagcatgttcttgttgaaatacacacacacacaagcat 346

                                                                       
Query: 529 gcgtatatataatatatatatatgtatatatatatatatatatatatgatgcatatatat 588
           |||||||||||  |||||||||||  ||| ||||||||||||||||||||||||||||||
Sbjct: 345 gcgtatatata--atatatatatg--tatgtatatatatatatatatgatgcatatatat 290

                                                                       
Query: 589 gatggtgcaaagcttaatactaatttaaaatatctgttttattgcctttaattaatattt 648
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gatggtgtaaagcttaatactaatttaaaatatctgttttattgcctttaattaatattt 230

                
Query: 649 ccaaa 653
           |||||
Sbjct: 229 ccaaa 225


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)