Query= MSMg01no535_d06.b1 MSMg01no535_d06.b1 CHROMAT_FILE:
MSMg01no535_d06.b1 PHD_FILE: MSMg01no535_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:57 2005
(670 letters)
>mm_chr2_21016427_21017496
Length = 1070
Score = 1268 bits (656), Expect = 0.0
Identities = 662/664 (99%)
Strand = Plus / Minus
Query: 7 gaattcatatgtatatatatatgaagggggaatgtcaaataagcatgagaaatggcagtg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gaattcatatgtatatatatatgaagggggaatgtcaaataagcatgagaaatggcagtg 811
Query: 67 tttaacacatgacaaacataccctacaacaacataacaacataacagaaaagtacatgtt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tttaacacatgacaaacataccctacaacaacataacaacataacagaaaagtacatgtt 751
Query: 127 tgtgtaatgagacaacttttgaggtaagtcttcctctctcccttccttccccaccctttt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tgtgtaatgagacaacttttgaggtaagtcttcctctctcccttccttccccaccctttt 691
Query: 187 aatttcttcatgtttgaagtatacaaaatgacaatagccatctatgatatcatcttaagt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aatttcttcatgtttgaagtatacaaaatgacaatagccatctatgatatcatcttaagt 631
Query: 247 ttgggctacatgtcccatttttcattctgatattgtcacatttcaattatctattcacct 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttgggctacatgtcccatttttcattctgatattgtcacatttcaattatctattcacct 571
Query: 307 tgattgtttgcatttgaggacactgactagcctattatttgaacattaagcctatttctt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tgattgtttgcatttgaggacactgactagcctattatttgaacattaagcctatttctt 511
Query: 367 ttgaagctaagatcactttgccattctatgagtgtgatggagacttgcttctcaagatat 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttgaagctaagatcactttgccattctatgagtgtgatggagacttgcttctcaagatat 451
Query: 427 tgagtgagggatgctcaatgctcacaccatggctttgcctgggcttctgctgcctttgaa 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgagtgagggatgctcaatgctcacaccatggctttgcctgggcttctgctgcctttgaa 391
Query: 487 tcaggtgctaacgcaagcctacagaggcatggactaccttcaaagaaggcatcgtagtct 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcaggtgctaacgcaagcctacagaggcatggactaccttcaaagaaggcatcgtagtct 331
Query: 547 ccatgctgttggctttcatcagaagtctgggctggcagggtcacccatggctggtcaact 606
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 330 ccatgctgttggctttcatcagaagtctaggctggcaggggcacccatggctggtcaact 271
Query: 607 gttttcaggtacattatatctcatccacttgcaagtctcctctctgcctccaatctattt 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gttttcaggtacattatatctcatccacttgcaagtctcctctctgcctccaatctattt 211
Query: 667 tctt 670
||||
Sbjct: 210 tctt 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_d06.g1 MSMg01no535_d06.g1 CHROMAT_FILE:
MSMg01no535_d06.g1 PHD_FILE: MSMg01no535_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:57 2005
(636 letters)
>mm_chr2_20849666_20850701
Length = 1036
Score = 1079 bits (558), Expect = 0.0
Identities = 618/648 (95%), Gaps = 21/648 (3%)
Strand = Plus / Plus
Query: 1 aagtggactctggggagaggaggcaaaggaagaaaagaggtggatacaggaatgtggggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtggactctggggagaggaggcaaaggaagaaaagaggtggatacaggaatgtggggg 260
Query: 61 tattggggttggacatgatttaacgtacattgtatacctgtacataattgttaaaaaata 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tattggggttggacatgatttaacgtacattgtatacctgtacataattgtttaaaaata 320
Query: 121 aattcttttcaattaggaataggtttataatgacaatgacttatttagttgttaaaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattcttttcaattaggaataggtttataatgacaatgacttatttagttgttaaaggag 380
Query: 181 taccacctacagtggccaaatctaatgcacgtttaaaacagaaaacacacacacacacac 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 taccacctacagtggccaaatctaatgcatgtttaaaacagaaaacacacacacacacac 440
Query: 241 acacacacacacacacaaagtaacacagttttaggccttcagtgacttcttcctcaacaa 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacacaca--------aagtaacacagttttaggccttcagtgacttcttcctcaacaa 492
Query: 301 atcctgctgtggcactaaattaataaccactagcttttatattcaagagcttttcctttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atcctgctgtggcactaaattaataaccactagcttttatattcaagagcttttcctttc 552
Query: 361 ctaccttttagcaaacatgtgacttcctaaaggcaggggaggtctaaagataagtaatct 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctaccttttggcaaacatgtgacttcctaaaggcaggggaggtctaaagataagtaatct 612
Query: 421 acactgtaaaatgtaagcaagagccagtcacactggcatatgccagcattgacaccaccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acactgtaaaatgtaagcaagagccagtcacactggcatatgccagcattgacaccaccc 672
Query: 481 cacagcactccatcagggcagacatctgcagctttctacaatttcagttggcacaatcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cacagcactccatcagggcagacatctgcagctttctacaatttcagttggcacaatcag 732
Query: 541 ttccatgcttacttcttttcttttcttttc----ctatttattta--tttattta--ttt 592
|||||||||||||||||||||||||||||| || ||| ||| ||| ||| |||
Sbjct: 733 ttccatgcttacttcttttcttttcttttcttttct-tttcttttcttttcttttctttt 791
Query: 593 attt----atttatttatttatttatttatttatttaattatttattt 636
||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 792 cttttcttatttatttatttatttatttatttatttatttatttattt 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
