BAC Information

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BAC

Clone NameMSMg01-535J21
Chromosome2 (Build37)
Map Location 72,526,264 - 72,702,751
singlet/doubletdoublet
Overlap geneLOC100039928, 6430710C18Rik
Upstream geneGm1631, Itga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960
Downstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535J21.T7 (MSMg01no535_j21.b1)MSMg01-535J21.TJ (MSMg01no535_j21.g1)
ACCAG603024AG603025
length738760
length of high quality
(start - end)		650 (76 - 725)544 (86 - 629)
definitionCHROMAT_FILE: MSMg01no535_j21.b1 PHD_FILE: MSMg01no535_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:29 2005CHROMAT_FILE: MSMg01no535_j21.g1 PHD_FILE: MSMg01no535_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,526,264 - 72,526,913)(72,702,208 - 72,702,751)
sequence
TTTTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAG
GATCCGCGGAATTCCATTTTCCTTGGCCCCAGAGTGTATGGGGGAGGGGA
GTGGAGTCAGAGAAGCCTCCTGAAGAACACAAGGCGAGGAAGAGTCTCCT
GTGACAGGCAAGATCAGAAGGTGAAGCAACCAGGGCCTTTTAGCTTAGGA
AAACGGAGAGCAGTGCACTGAGCTGGGAGAAGGAACCAGAATCCCGAGGC
TGACAGAGAGCTGGGAACAGGCCAACACAGTCTGTGGTGACATTCCCTGG
ATTAGGTGACATCTGGGAATCCCTGTGAGTTTTTGAGAAGAAAACTGACA
TGACCAAGGGAGTCTCTGGAATAATTCTATGATGGTAGAGTGTGAATTGA
GATGATCCTATGATATTACAGAGTGAATTGAGATGATTCTATGATAGTAC
AGGGTGAACTGAAGTCAAGAGTGACCAAAGGCAGAAGACTGGTCAATGGT
TTCAGGACCATAGTGGTTAGAATAGAGTCTGACAGTCACTGCTGTACACA
GGTTGAAGTTCCCCTACAGTACCTTCCCTTCTCATGCAGACAGGGCCATT
GCCAGTCCTATGACAAAAGAACTGGCTCAGGGAAAGGGTATAGAACAGCT
CANAGCTTGCTTGAGGAGGGAGCAAGCAGGATAGAGACTTTGTCATTGAC
ATCATGAAGGTCAGAGGGGCATTCCCTGCCATCTCCAG

GCAAAATGCACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGGGTTTCTGGAA
GCACAATTTCATCAAGGGCCGAAGGAAAATGAAAAGGAAGACAGCAGGCG
TAATTGCTGTGAGCAACAGCTTCCCGCTGAGAGAGAAGGGCTTTACCATC
AGCTCGGTAAGAATACATCCAGGCAAATACCGAAAACATGGAAATAAACA
CTTCTCATAAAATCAGAACCGGAGGACAAAAGGGCGCCCAGAGCCTTGCT
ATGTGTAGCAGAAAAGAGAGCGAGCAAAGGCCAGGTGAGGCGGTAATAGA
AAAAGAGAAGCGAGAAAATTACATCTCTGTGGGCATCATTAGGGTGAAGG
AAAGCAGGCCAATGGAAGGCGCTTAAAATGTAAGGGAGCAAAGCATCAGA
CCCGCCATGGGTCAAATCCCAGAGGAGCAAATGGTGCTGTAAAGGAAATT
TCTTTATAATAAAAAAGGAATAAGGTGGAAGGGTGGGAGGAAAGATGGCA
GCCAGGAGTCAGGGAAACTGGGTCATACTAGGCTGTCTTACCACTGGCTA
CGTCTCCTTGGGCACCCATCCTGAGCTTCTGGGTCAGGCTACTTGGTCCT
GTGGCATCACAGGCTTAATCCAGTGCAGATCTGTAACATTTTGACAGTGT
GACCCCCTTTAGCCCCCCACCCCCCGACAAACTTATAAATCCTCTTTGCA
AAAAGTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_j21.b1 MSMg01no535_j21.b1 CHROMAT_FILE:
MSMg01no535_j21.b1 PHD_FILE: MSMg01no535_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:29 2005
         (650 letters)



>mm_chr2_72526064_72527113
          Length = 1050

 Score = 1174 bits (607), Expect = 0.0
 Identities = 639/650 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccccagagtgtatgggggaggggagtggagtcagagaagcctcctgaagaacacaaggc 60
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccccatagtgtataggggaggggagtggagtcagagaagcctcctgaagaacacaaggc 260

                                                                       
Query: 61  gaggaagagtctcctgtgacaggcaagatcagaaggtgaagcaaccagggccttttagct 120
           ||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 gaggaagagtcttgtgtgacaggcaagatcagaaggtgaagcaaccaaggccttttagct 320

                                                                       
Query: 121 taggaaaacggagagcagtgcactgagctgggagaaggaaccagaatcccgaggctgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggaaaacggagagcagtgcactgagctgggagaaggaaccagaatcccgaggctgaca 380

                                                                       
Query: 181 gagagctgggaacaggccaacacagtctgtggtgacattccctggattaggtgacatctg 240
           || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 gacagctgggaacaggccaatacagtgtgtggtgacattccctggattaggtgacatctg 440

                                                                       
Query: 241 ggaatccctgtgagtttttgagaagaaaactgacatgaccaagggagtctctggaataat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaatccctgtgagtttttgagaagaaaactgacatgaccaagggagtctctggaataat 500

                                                                       
Query: 301 tctatgatggtagagtgtgaattgagatgatcctatgatattacagagtgaattgagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctatgatggtagagtgtgaattgagatgatcctatgatattacagagtgaattgagatg 560

                                                                       
Query: 361 attctatgatagtacagggtgaactgaagtcaagagtgaccaaaggcagaagactggtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 attctatgatagtacagggtgaactgaagtcaagagtgaccaaaggcagaagactggtct 620

                                                                       
Query: 421 atggtttcaggaccatagtggttagaatagagtctgacagtcactgctgtacacaggttg 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggcttcaggaccatagtggttagaatagagtctgacagtcactgctgtacacaggttg 680

                                                                       
Query: 481 aagttcccctacagtaccttcccttctcatgcagacagggccattgccagtcctatgaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagttcccctacagtaccttcccttctcatgcagacagggccattgccagtcctatgaca 740

                                                                       
Query: 541 aaagaactggctcagggaaagggtatagaacagctcanagcttgcttgaggagggagcaa 600
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 aaagaactggctcagggaaagggtatagaacagctcaaagcttgcttgaggagggagcaa 800

                                                             
Query: 601 gcaggatagagactttgtcattgacatcatgaaggtcagaggggcattcc 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcaggatagagactttgtcattgacatcatgaaggtcagaggggcattcc 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no535_j21.g1 MSMg01no535_j21.g1 CHROMAT_FILE:
MSMg01no535_j21.g1 PHD_FILE: MSMg01no535_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:29 2005
         (544 letters)



>mm_chr2_72702008_72702951
          Length = 944

 Score = 1044 bits (540), Expect = 0.0
 Identities = 543/544 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggggtttctggaagcacaatttcatcaagggccgaaggaaaatgaaaaggaagacagc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 744 atggggtttctggaagcacaatttcatcaagagccgaaggaaaatgaaaaggaagacagc 685

                                                                       
Query: 61  aggcgtaattgctgtgagcaacagcttcccgctgagagagaagggctttaccatcagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aggcgtaattgctgtgagcaacagcttcccgctgagagagaagggctttaccatcagctc 625

                                                                       
Query: 121 ggtaagaatacatccaggcaaataccgaaaacatggaaataaacacttctcataaaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggtaagaatacatccaggcaaataccgaaaacatggaaataaacacttctcataaaatca 565

                                                                       
Query: 181 gaaccggaggacaaaagggcgcccagagccttgctatgtgtagcagaaaagagagcgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaaccggaggacaaaagggcgcccagagccttgctatgtgtagcagaaaagagagcgagc 505

                                                                       
Query: 241 aaaggccaggtgaggcggtaatagaaaaagagaagcgagaaaattacatctctgtgggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaggccaggtgaggcggtaatagaaaaagagaagcgagaaaattacatctctgtgggca 445

                                                                       
Query: 301 tcattagggtgaaggaaagcaggccaatggaaggcgcttaaaatgtaagggagcaaagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcattagggtgaaggaaagcaggccaatggaaggcgcttaaaatgtaagggagcaaagca 385

                                                                       
Query: 361 tcagacccgccatgggtcaaatcccagaggagcaaatggtgctgtaaaggaaatttcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcagacccgccatgggtcaaatcccagaggagcaaatggtgctgtaaaggaaatttcttt 325

                                                                       
Query: 421 ataataaaaaaggaataaggtggaagggtgggaggaaagatggcagccaggagtcaggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ataataaaaaaggaataaggtggaagggtgggaggaaagatggcagccaggagtcaggga 265

                                                                       
Query: 481 aactgggtcatactaggctgtcttaccactggctacgtctccttgggcacccatcctgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aactgggtcatactaggctgtcttaccactggctacgtctccttgggcacccatcctgag 205

               
Query: 541 cttc 544
           ||||
Sbjct: 204 cttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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