BAC Information

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BAC

Clone NameMSMg01-536B21
Chromosome2 (Build37)
Map Location 22,464,273 - 22,464,734
singlet/doubletsinglet
Overlap geneMyo3a
Upstream geneGpr158, LOC637235, Myo3a, LOC100041703
Downstream geneGad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536B21.T7 (MSMg01no536_b21.b1)MSMg01-536B21.TJ (MSMg01no536_b21.g1)
ACCAG603408AG603409
length778802
length of high quality
(start - end)		559 (44 - 602)466 (80 - 545)
definitionCHROMAT_FILE: MSMg01no536_b21.b1 PHD_FILE: MSMg01no536_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:08 2005CHROMAT_FILE: MSMg01no536_b21.g1 PHD_FILE: MSMg01no536_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGC
GGAATTCTTTGTTTATTTCTGAGCCCCATTCTTTAATGGGGTTATCTGAT
TTTCTGGAGTCCACCTTCTTCAGTTCTTAATATATATTAGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAGTCTGTTGGTGGCC
TTTTTGTCTTATTGACAGTGTCCTTTGCCCTGCAGAACCTTTGCAATTTT
ATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTATTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTATGTGGAGTTCACAT
GGAAATTGTTTTCAATCCTTTTACTCTGAGGTAGTGTCTGTCTTTGTAAC
TGTGGTGGGTTTCCTGTATGCAGCAAAATGTTGGATCCTGTTTATGTAGC
CAGTCTGTTAGTCTATGTCTTTTAATTGGGGAATTGAGTCTATTGATATT
AAGCGATTTTAAGGAAAAGTAATTGTTGCTTCCTACTATTTTTGTTGTTA
GAGTTAGGATTCTGTTCTTGTGGCTATTTTCTTTTAGGTTTGTTGAAGGA
TTACTTTCTTGCTTTTTCTGTGGGATAATTTCCCTCCTTGGGTTTGAGTT
TTCTCTTTATTTTCCTTTGAAAGGCTGGATGCATTGGAAGAATTTGGTTT
TTCATGGAGGACTTTGTTTTTTCCATCT

NNNNCCGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACAGCTCACTAAAAACAAA
TGAATTGGTTTAAACTGGGCAAAGGACCTGAAGAGACATTTCTCAAAAGA
ACGCACACAAATAACCAAAATTCACACACAAAAAATCCAATTCAAGATTA
AATGAATATCACATTCTAGGAACAAAAGACGTCAGAATCAGTGCAGTACT
ACTCAGACTAGAAATAAAAAAGAATCAAGCTCCTGACTGTCTGGCAAGAA
GACTGACTATTTAAAGTTTGTGTAGACAATAAAATGATATAGTCATTAAA
CAGGACTAGAAAAATCTCCAGGTTTAACACCTTAAAAGACTGTGTAACCA
TTATGTTAGGCTAGAGAGATGGCTCAGTAGGTTATGCACACTTGGTATGC
AGGCCTGGTGACCTGAGTTCAGATCTCTGACATTTGTTAAAAGCCATCTG
TAGTGTTGGATATCTGTAATCCTGGCACTCCTACAGCAAGATGGTAGAGA
ATTGTTCAGAAGTTTGGAGTACATAGCGTAGGAGTGAGAAACAAAAAACC
TTGCCTAAAAACAAAAAGATAGCAGGCAAAAAATATAGCTTCCATTCNAA
GAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAATCACAAGATAGAT
AAACCCTTAGCTAGACTCACTAGAGGGCACAGGGAGCAAATCCTATTTTA
CAAATCCGAAATGAAAAGGAGACCTACAACAGATCCTGAAGAAATCCAAA
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_b21.g1 MSMg01no536_b21.g1 CHROMAT_FILE:
MSMg01no536_b21.g1 PHD_FILE: MSMg01no536_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:08 2005
         (466 letters)



>mm_chr2_22464099_22464964
          Length = 866

 Score =  872 bits (451), Expect = 0.0
 Identities = 460/463 (99%), Gaps = 1/463 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacagctcactaaaaacaaatgaattggtttaaactgggcaaaggacctgaagagacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aaacagctcactaaaaacaaatgaattggtttaaactgggcaaaggacctgaagagacat 577

                                                                       
Query: 61  ttctcaaaagaacgcacacaaataaccaaaattcacacacaaaaaatccaattcaagatt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttctcaaaagaacacacacaaataaccaaaattcacacacaaaaaatccaattcaagatt 517

                                                                       
Query: 121 aaatgaatatcacattctaggaacaaaagacgtcagaatcagtgcagtactactcagact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aaatgaatatcacattctaggaacaaaagacgtcagaatcagtgcagtactactcagact 457

                                                                       
Query: 181 agaaataaaaaagaatcaagctcctgactgtctggcaagaagactgactatttaaagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agaaataaaaaagaatcaagctcctgactgtctggcaagaagactgactatttaaagttt 397

                                                                       
Query: 241 gtgtagacaataaaatgatatagtcattaaacaggactagaaaaatctccaggtttaaca 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gcgtagacaataaaatgatatagtcattaaacaggactagaaaaatctccaggtttaaca 337

                                                                       
Query: 301 ccttaaaagactgtgtaaccattatgttaggctagagagatggctcagtaggttatgcac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 336 ccttaaaagactgtgtaaccattatgttaggctagagagatggctcagtagg-tatgcac 278

                                                                       
Query: 361 acttggtatgcaggcctggtgacctgagttcagatctctgacatttgttaaaagccatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 acttggtatgcaggcctggtgacctgagttcagatctctgacatttgttaaaagccatct 218

                                                      
Query: 421 gtagtgttggatatctgtaatcctggcactcctacagcaagat 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gtagtgttggatatctgtaatcctggcactcctacagcaagat 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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