Query= MSMg01no537_e13.b1 MSMg01no537_e13.b1 CHROMAT_FILE:
MSMg01no537_e13.b1 PHD_FILE: MSMg01no537_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:37 2005
(570 letters)
>mm_chr2_102314333_102315298
Length = 966
Score = 977 bits (505), Expect = 0.0
Identities = 550/567 (97%), Gaps = 4/567 (0%)
Strand = Plus / Minus
Query: 4 ggaattctctcagttccctctgctgttgtcatagaaagagagtagttcaggattacaaaa 63
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 766 ggaattctctcagttccctctgctgttgtcat----agagagtatttcaggattacaaaa 711
Query: 64 tgactgaattgggctcaccattcacagtagccttcacatctgtgccccaccatcaactgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tgactgaattgggctcaccattcacagtagccttcacatctgtgccccaccatcaactgt 651
Query: 124 atcaacaatactcaaagcgtgtccatgcatgtgtctgtgttctgcatcctcctttggctg 183
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 650 atcagcaatactcaaagcgtgtccatgcatgtgtctgtgttctgcatcctcctttgactg 591
Query: 184 cctgtggaaaagatgatctagaaggaactgcaatatctgaatgctcaggtgccaccttag 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 590 cctgtggaaaagatgatctagaaggaactgcaatatctgaatgctcagatgccaccttag 531
Query: 244 tgccacatcccatctccatctccagagatctgtccaagaatcggcaatagtagaggaaga 303
|||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 530 tgccacatcccatcaccatctccagagagctgtgcaagaatcggcaatagtagaggaaga 471
Query: 304 cagaagcagaatatgaatgcaaaagcaataagtgcttcccagaatctgtcagcacttttc 363
|||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct: 470 cagaagcagaatatgaatgcaaaagcaataagtgcttcccaggatccatcggcacttttc 411
Query: 364 cagcattctagttagtagctaggctctgtagagttggtccacaaggatagtgggaacatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cagcattctagttagtagctaggctctgtagagttggtccacaaggatagtgggaacatt 351
Query: 424 tctagtgtgcatctagctccttctcttgtggtagagactgtgacgttgctttcagaataa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tctagtgtgcatctagctccttctcttgtggtagagactgtgacgttgctttcagaataa 291
Query: 484 tcccctggcctggtgtgcttgcttatttctctaactccttcaagtcattgcccaatttgt 543
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 290 tcccctggcctggtgttcttgcttatttccctaactccttcaagtcattgcccaatttgt 231
Query: 544 gaggttttcattatttatggctttctc 570
|||||||||||||||||||||||||||
Sbjct: 230 gaggttttcattatttatggctttctc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 966
Length adjustment: 10
Effective length of query: 560
Effective length of database: 956
Effective search space: 535360
Effective search space used: 535360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_e13.g1 MSMg01no537_e13.g1 CHROMAT_FILE:
MSMg01no537_e13.g1 PHD_FILE: MSMg01no537_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:37 2005
(592 letters)
>mm_chr2_102159237_102160230
Length = 994
Score = 1031 bits (533), Expect = 0.0
Identities = 571/594 (96%), Gaps = 18/594 (3%)
Strand = Plus / Plus
Query: 1 ttttgggggttgtttttatatttaagatcatttgctgtgagacaacaaagacactccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttttgggggttgtttttatatttaagatcatttgctgtgagacaacaaagacactccttt 276
Query: 61 attaaactattttaaggaccgatagataaatagatagatagatagatagatagatagata 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 277 attaaactattttaaggaccgatagata----gatagatagatagatagatagatagata 332
Query: 121 gatagatagatagatagatagatagatagataaatgtaacaactctcacagtttaaataa 180
||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 333 gatagatagatagatagatagat------------gtaacaactctcacagtttaaataa 380
Query: 181 agcccctggaagtctgtttttgttgttattcatttggagagatggttatttctccacaaa 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 agcccctggaagtctgtttttgttgttgttcatttggagagatggttatttctccacaaa 440
Query: 241 ttgattctccaggtatctctccagtcaaagtgtttatagtactaggggccctgttgggcc 300
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 441 ttgattctccaggtatctctccagtcaaactgtttatagtactaggggccccgttgggcc 500
Query: 301 taacccactaaaggttagttataatcatttgttcactgaagagaatgggcagacaaagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taacccactaaaggttagttataatcatttgttcactgaagagaatgggcagacaaagcc 560
Query: 361 ctggaaaaataaatgcaatggaggctgggaactactggtgtatgtaaaaagcaagatgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggaaaaataaatgcaatggaggctgggaactactggtgtatgtaaaaagcaagatgac 620
Query: 421 ccccccc--atttatcttttaattgttttaattggcatggatggctatgctttatatatg 478
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccccccccatttatcttttaattgttttaattggcatggatggctatgctttatatatg 680
Query: 479 taaagtctgaggcttacagttggagcccacatttgcccaattataaagcccatggtttcc 538
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 taaagtctgaggcttacagttggagcccacatttgcccaattataaaacccatggtttcc 740
Query: 539 aagaaatagaaagtgggggctgactgtggatttttttcangcctgcatcactca 592
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 741 aagaaatagaaagtgggggctgactgtggatttttttcaggcctgcatcactca 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 994
Length adjustment: 10
Effective length of query: 582
Effective length of database: 984
Effective search space: 572688
Effective search space used: 572688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
