Query= MSMg01no537_h04.b1 MSMg01no537_h04.b1 CHROMAT_FILE:
MSMg01no537_h04.b1 PHD_FILE: MSMg01no537_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:49 2005
(691 letters)
>mm_chr2_86115319_86116407
Length = 1089
Score = 1193 bits (617), Expect = 0.0
Identities = 670/689 (97%), Gaps = 4/689 (0%)
Strand = Plus / Minus
Query: 4 ggaattccatatctttacagtatcttccaggctctgctgttccctattaggtatttcaca 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 ggaattccatatctctacagtatcttccaggctctgctgttccctattaggtatttcaca 830
Query: 64 ttaaacttctgtggtgctaatgttataagccatttctattgtgatgttgtccccttacta 123
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ttaagcttctgtggtgctaatgttataagccatttctattgtgatgttgtccccttacta 770
Query: 124 cctttgatctgttcacatgtagaagagacagaattattgactatattgttttcagccttc 183
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 769 cctttgatctgttcacatgtagaggagacagaattattgactatactgttttcagccttc 710
Query: 184 aatttaatctcttctcttcttgttgttcttttgtcttacatgctaattttgttaaccata 243
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aatttaatctcttctcttgttgttgttcttttgtcttacatgctaattttgttaaccata 650
Query: 244 tttcgaatgcgttctgcagaaggtaggaaaaaagctttctccacttgtggttcccatctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tttcgaatgcgttctgcagaaggtaggaaaaaagctttctccacttgtggttcccatctg 590
Query: 304 acagtggtggttgtgttctacggttctctactcttcatgtatgttcagcctaaatctgct 363
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 589 acagtggtggttgtgttctatggttctctactcttcatgtatgttcagcctaaatctgct 530
Query: 364 cactcatttgaatatgacaaagcagcatctgtgttttatactttagtgatccccatgctt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 cactcatttgaatatgacaaagcagcatctgtgttttatactttagtgatccccatgctt 470
Query: 424 aaccccttgatttatagtttaaggaacaaagaggtaaaaaatgcctttcatagagtattt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aaccccttgatttatagtttaaggaacaaagaggtaaaaaatgcctttcatagagtattt 410
Query: 484 aagaatctatgaagactgcattattcagtattaagtaataatatgtgacaattgtaactg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aagaatctatgaagactgcattattcagtattaagtaataatatgtgacaattgtaactg 350
Query: 544 ccatatgatatttccaaaatggttgcatttagctccacaaaattctattatagtttaaat 603
|||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||
Sbjct: 349 ccatatgatatttccaaaatagttgcatttaactccacaaaattttattatagtttaaat 290
Query: 604 ggagatattgcttcacaattttactcaattcctcc-ttataatagaaatattaatttaat 662
||||||||| || ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 289 tgagatattgttttacaattttactcaattcctcccttata---gaaatattaatttaat 233
Query: 663 cttacatgcttactcttaattcctgcttc 691
||| ||| |||||||||| ||||||||||
Sbjct: 232 cttgcatccttactcttatttcctgcttc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1089
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1079
Effective search space: 734799
Effective search space used: 734799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_h04.g1 MSMg01no537_h04.g1 CHROMAT_FILE:
MSMg01no537_h04.g1 PHD_FILE: MSMg01no537_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:49 2005
(660 letters)
>mm_chr2_86003245_86004304
Length = 1060
Score = 1224 bits (633), Expect = 0.0
Identities = 645/651 (99%), Gaps = 4/651 (0%)
Strand = Plus / Plus
Query: 1 cctaaatattttgtgcatcaaaatacttactattaggaaataagtggtgtataaagaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaaatattttgtgcatcaaaatacttactattaggaaataagtggtgtataaagaagg 260
Query: 61 cctcagaaaacatattaaacacatatatctctaggctttgcagttaggaacttttactga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcagaaaacatattaaacacatatatctctaggctttgcagttaggaacttttactga 320
Query: 121 atttttgcttttgtatatttaagtgttctaaatttcattttcctatctgtagtacttatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttttgcttttgtatatttaagtgttctaaatttcattttcctatctgtagtacttatg 380
Query: 181 aatttcaaaagagagaaaaataacaatactaatttgaaaatcgcatacctaatattcata 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttcaaaagagagaaaaataacaatactaatttgaaaatcgcatacctaatattcat- 439
Query: 241 cacacacacacacacacacacacacagaggaatatgtatgaatagttttcccattataga 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ---acacacacacacacacacacacagaggaatatgtatgaatagttttcccattataga 496
Query: 301 taaataatatgacagtaatacttttagtaatataagattcagtaatactaatatatctta 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 497 taaataatatgacagtaatacttttagtaatataagattcagtaatactaatttatctta 556
Query: 361 taccttcaaacattcagcatcagagggaagaaagtcagtatttttggagtctcattcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 taccttcaaacattcagcatcagagggaagaaagtcagtatttttggagtctcattcttc 616
Query: 421 tagattgctctctggttactggaaagatgacagaataaacttggtcctttaaccacaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tagattgctctctggttactggaaagatgacagaataaacttggtcctttaaccacaata 676
Query: 481 gagaatgtgctgttttcatttatattattctcagcatcatgccagtcttctcaccagctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gagaatgtgctgttttcatttatattattctcagcatcatgccagtcttctcaccagctt 736
Query: 541 tctagattgacatagcatatagtatgtatatattattgctatagtatctgaaatatttag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tctagattgacatagcatatagtatgtatatattattgctatagtatctgaaatatttag 796
Query: 601 aaggaaagaatatgtgacccatataccaaaaatcaaacccaataatactac 651
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 797 aaggaaagaatatgtgacccatttaccaaaaatcaaacccaataatactac 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
