XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
GTCTGGCTCACCATGTCCAGATAATAGCTTTATTATTATTTTTAGTTGTG
TCAATTATTACTCTGTGTGTGTGTGTGTGTATACAGGTGCACATGTGTGG
AGCTCAGAGGACACCTTTCAGGAGTAACTTCTCTCCTTTCACCGTGAATT
CTGGGGATCAAATTCAGGTCTTCAGACATGCACAGCATGCACTTTAGCTA
CTGAACTACCTCACCAGCCATCACTGCCACCTCCTCCTCCTCTTCCCCCT
TTTCCTCTTCCTCCTCCTGCTCTTCTTCATTTTGAAAAGTTCATTTTAAC
AGAGTAGGTATTTTACTCCTTTGTTCCAATCTGCTTATAGAGCATATCAG
ATATTTCCATACCGAAAGTACTTAGTTCTGGACTGGCACATTCATGTAGA
CGGGTCACTCCAGGCGCAGGACTGTGGGACAGCATCTGATCTGCAACCAG
ATTTATTTCAATGTTTTATTTTACTAGTATCAGATTTTGTTAGAACTGTG
AATATGGACAGGACAATAGTTCGAGATTTTAGACGTGATCAGTCTTCTCT
GGTCCGGAACTCACAGAGATCTGTCTACCTCTGTCTCTTGAGTGTTGAGA
CTAAAGGTTTCCTCAGCGCACAGACAATTTTGATATATTTCTAAAAGCAA
GACGTTTTGATATGGGCAGTGCATGCCTGTG

TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTGGACAGGGAGTCTCAATGAAAGATCTAGA
TTACGTTGATCTGTGGATATGGCGTGTGAGGGGTTTTCTTAATTGGGGTA
AGGGACGCGGTGGATAGGCACACCAAGTATGGATAACATCATGTCATGAA
TGAGGCCCCAGATTAAATGAAAAGAAGAGAGTGTGCTGAACTCCAGCAGG
CATGCATTGCTAGCTGAGCTCCAGCAGGCATACATTGCTGGCTGACCTCC
AGCAGGCATGCATTGCTAGCTGAGCTCCAGCAGGCATGCATTTGCTGGCT
ATTCTTGACTGTGGATGCAACCCACTCCCTCAAGTTCCTGCTGTTGTGAC
TTTGGTGGATGGGTCAACAACCTGGAACCATGAGCTGAAATAAACTTTCT
CCCATAATTTGCTTTTGTCAGGGTATTCTATTATAGCAACATCAAAATCA
AAGTAGATGAAGATACTATGTAACTTCTTTGTGTCAATGCTGTTTCCAGT
CTGTGAGACAGGGTCTCTCTATATTTAGCCTGGGCTGGCCTTGAAATCAA
AATCTCAAACACAAGGCAATCCTCTGGCCTCAGCCTCACAAGGGCCAGGA
TTACAGGTACCCACCACCAAACCCAAAAGTACTGTGCTAATTCTGGTGGT
TTCTTTTTGGGAGCTGTTTCCCGGGAAACCCACC

Query= MSMg01no538_b12.b1 MSMg01no538_b12.b1 CHROMAT_FILE:
MSMg01no538_b12.b1 PHD_FILE: MSMg01no538_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:40 2005
         (635 letters)



>mm_chr2_71137393_71138427
          Length = 1035

 Score = 1060 bits (548), Expect = 0.0
 Identities = 589/618 (95%), Gaps = 24/618 (3%)
 Strand = Plus / Minus

                                                                        
Query: 40   ctttattattatttttagttgtgtcaattattactc------------------------ 75
            ||||||||||||||||||||||||||||||||||||                        
Sbjct: 1035 ctttattattatttttagttgtgtcaattattactctgtgtgtgtgtgtgtgtgtgtgtg 976

                                                                        
Query: 76   tgtgtgtgtgtgtgtgtatacaggtgcacatgtgtggagctcagaggacacctttcagga 135
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975  tgtgtgtgtgtgtgtgtgtacaggtgcacatgtgtggagctcagaggacacctttcagga 916

                                                                        
Query: 136  gtaacttctctcctttcaccgtgaattctggggatcaaattcaggtcttcagacatgcac 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915  gtaacttctctcctttcaccgtgaattctggggatcaaattcaggtcttcagacatgcac 856

                                                                        
Query: 196  agcatgcactttagctactgaactacctcaccagccatcactgccacctcctcctcctct 255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855  agcatgcactttagctactgaactacctcaccagccatcactgccacctcctcctcctct 796

                                                                        
Query: 256  tcccccttttcctcttcctcctcctgctcttcttcattttgaaaagttcattttaacaga 315
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 795  tcccccttttcctcttcctcctcctgctcttcttcattttgaaaagttcattttaacaaa 736

                                                                        
Query: 316  gtaggtattttactcctttgttccaatctgcttatagagcatatcagatatttccatacc 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735  gtaggtattttactcctttgttccaatctgcttatagagcatatcagatatttccatacc 676

                                                                        
Query: 376  gaaagtacttagttctggactggcacattcatgtagacgggtcactccaggcgcaggact 435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675  gaaagtacttagttctggactggcacattcatgtagacgggtcactccaggcgcaggact 616

                                                                        
Query: 436  gtgggacagcatctgatctgcaaccagatttatttcaatgttttattttactagtatcag 495
             |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 615  atgggacagcatctgatctgcaaccagatttatttctttgttttattttactagtatcag 556

                                                                        
Query: 496  attttgttagaactgtgaatatggacaggacaatagttcgagattttagacgtgatcagt 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555  attttgttagaactgtgaatatggacaggacaatagttcgagattttagacgtgatcagt 496

                                                                        
Query: 556  cttctctggtccggaactcacagagatctgtctacctctgtctcttgagtgttgagacta 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495  cttctctggtccggaactcacagagatctgtctacctctgtctcttgagtgttgagacta 436

                              
Query: 616  aaggtttcctcagcgcac 633
            ||||||||||||||||||
Sbjct: 435  aaggtttcctcagcgcac 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)