Query= MSMg01no539_d02.b1 MSMg01no539_d02.b1 CHROMAT_FILE:
MSMg01no539_d02.b1 PHD_FILE: MSMg01no539_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:03 2005
(532 letters)
>mm_chr2_102385052_102385983
Length = 932
Score = 882 bits (456), Expect = 0.0
Identities = 496/528 (93%), Gaps = 31/528 (5%)
Strand = Plus / Plus
Query: 5 gaattcacagagatccttctgtaatctgtctcctgggattaaaggtatgtgtcaccacac 64
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 212 gaattcacagagatccttctgt-------ctcctgggattaaaggtatgtgtcaccacac 264
Query: 65 tgggcaggagacaacttttcactttgactgacattcctatttcctggtagatcactctgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgggcaggagacaacttttcactttgactgacattcctatttcctggtagatcactctgc 324
Query: 125 atttttcatacttgggatttattcctctctggagcattgcataggaaccattgatgtctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttttcatacttgggatttattcctctctggagcattgcataggaaccattgatgtctg 384
Query: 185 atgggtaagatggcttggtgtgtaaagacacttgctgccaagaatgagaactccagtttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgggtaagatggcttggtgtgtaaagacacttgctgccaagaatgagaactccagtttg 444
Query: 245 gtcctcagatcccacatagtgaaagagagaaccaactcctagaagttatcctgtgaccct 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 gtcctcagatcccacatagtgaaagagagaaccaactcctagaagttatcctttgaccct 504
Query: 305 ctgacttacacacacacacacacacacacacacacacacacacacacacacacacacaca 364
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgacttacacacacacacacacacacacacacacacacacacacacac----------- 553
Query: 365 cacacactcacacactcacacacacactcacacgtaaaaatatgactgcagaaattttaa 424
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 554 -------tcacacac------acacactcacacgtaaaaatatgactgcagaaattttaa 600
Query: 425 gaaaaagatcttggatgtcactactataacatcaagtcaatattcgattttaggtgctgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaaaaagatcttggatgtcactactataacatcaagtcaatattcgattttaggtgctgt 660
Query: 485 tctgagccctttgatccaggcctatgggagatattactgttatttttc 532
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tctgagccctttgatccaggcctatgggagatattactgttatttttc 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_d02.g1 MSMg01no539_d02.g1 CHROMAT_FILE:
MSMg01no539_d02.g1 PHD_FILE: MSMg01no539_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:03 2005
(648 letters)
>mm_chr2_102405761_102406808
Length = 1048
Score = 1222 bits (632), Expect = 0.0
Identities = 644/648 (99%)
Strand = Plus / Minus
Query: 1 tttagaaatctaatatttggagttgtgcatcattgggaagggaaggggagtgagaattaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttagaaatctaatatttggagttgtgcatcattgggaagggaaggggagtgagaattaa 626
Query: 61 gtttatcacttgcttttcttcttctttcctcttcactttactgacacacagctccatgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtttatcacttgcttttcttcttctttcctcttcactttactgacacacagctccatgtc 566
Query: 121 acagctctgcttcaatccccgtttaagtcacaccacacatcgtggctggctctcagtcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acagctctgcttcaatccccgtttaagtcacaccacacatcgtggctggctctcagtcca 506
Query: 181 tgaaagtcaccagctcattggtccagtccacagaaccaccatttaaagtgagtgttgttt 240
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cgaaactcaccagctcattggtccagtccacagaaccaccatttaaagtgagtgttgttt 446
Query: 241 gcttcatttaatgggtaatgaaacagacagtaagtagatggctcatggtgtacatctttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcttcatttaatgggtaatgaaacagacagtaagtagatggctcatggtgtacatctttt 386
Query: 301 aggcagacagatgagaacctcactcttagtgtcttaccaatatggtaaattggttcccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggcagacagatgagaacctcactcttagtgtcttaccaatatggtaaattggttcccca 326
Query: 361 gagtctaaacctctgactttaccatttaagaagaaagcaacgagtcggggagagaaatca 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 gagtctaaacctctgactttaccatttaagaagaaagcaatgagtcggggagagaaatca 266
Query: 421 gtagataaagtgtttggcatacaactgtgaggatcagagttctaatcctcaacccccaca 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 gtagataaagtgtttggcatacaactgtgaggatcagagttctaatcctcaacccctaca 206
Query: 481 tagcagcacatctgcaatccctacccttggaaggcagagacgggatccctagggcgagtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tagcagcacatctgcaatccctacccttggaaggcagagacgggatccctagggcgagtt 146
Query: 541 gactagctagattatccagatcaataagtttcagggtcaaaaagaatctctacctcaata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gactagctagattatccagatcaataagtttcagggtcaaaaagaatctctacctcaata 86
Query: 601 aataaaatctccatcgatcaggagtgatcaaggaagacttctgaagtc 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 aataaaatctccatcgatcaggagtgatcaaggaagacttctgaagtc 38
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
