NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATCAAGCTTTCAAAGAAGACCTAATACCAATACTCTTCACA
CTATTCCACAAACTAGGATCAGAAGGAACACTACACAATTCTTTCTATGA
TGCCACAATTATGCTCATACCTAAACCACACAAAGACCCAACAAAGAAAG
AGAACTTCAGACTAATTTCCTTTATGAGTATCGTTGCAAAAATACTCAAT
AAAATTCTTAAAAAACCGAATCCAAGAACACATCAAAACAATCGTCCATC
ATGATCAAGTAGGCTTCATCCCAGAGATGCAGGGATGGTTTAATACATTG
AAATCCATCAAAGTAATCCACTATATAAACAAACTCAAATTAAAAAAAAA
AACCTCATGATCATTTCATTAGATGCTGAGAAAGCATTTGACAGAATTCA
ACACCTCTTCATGAAAAAAGACTTTGAATGGTCAGGAATTCAAGGCCCAT
ACCTAAGCATAGTACAAGCAATCTACAGCAAACCAGTAGTCAATATCAAA
GTAAATGGAGAGAAACCTGAAACAATCCCACTAAAATCAGGAACTAGACA
AGGCTGCCCATTTTCTCCCTACCTATTCAAGTACTTGAAGTCCTAGCCAG
AGCAATTAGACAACTAAATGAGGTTAAAGGGATACAAATTGGAAAGGAAG
AAGTCATTGCAAATGATATGATNATATACTTAAGTGACCTCNAAAATTCT
ACCCGAGACTTATAAACCTGATAACAACTTCAGCAAAGTGG

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAGTTTGATGTGTTTTTAGGATGTG
AGATGGGGTATGATGCTAGCTCAGAGACAAAGCATAGCATGGAGAATATC
TGAGCTTTGGTCTAAAGAATCTCAGTAAAGTGAAAGGTGTGTGTTGTACC
ATGGACCTCTCCTTTGAGTGTACTTGTGTTGATATTACTTGTTTGCGTCA
TCTGTGCATCAATCACATTAACTAATTTTCCTGTTGTAAACTAAGCTTAC
ATTCCTGGTTAAAGGTCAAATGGCATTCATTCAAACTAGCCATGGTGTAC
TGCAATGCCTATAGATTGCTGAACTCAACTCACTAATATTTCCCTTAGGA
TGTTTGCAAATATTTGCAATGGGAATTAACATATAAAGGCCTTATATTTT
CTTCATCGAGGGTGGCACCAATGTTTCCTTAGCCTTGTGAAATTAATTGG
AAGACTTTTCTTTGTTTTTGAATTCTGAATTATTTGTTTCTTCTGGGTTT
GGTAAAAATGAATCAGTAAATTGGTCACGATGTACTTGTGGGGAGACTTA
ACTTTTAACTTTTTCCACGGCTGGTGGACCATGCTGGTTTGTGGTTCTTT
TTAACTAGGATTTGCTTTTTTGTTGGGAGGACACTGTGGGTGTGAGTATT
GGGTGTGCAACAGTATGCTAGAGATCAGAGAACAACTTTACAGGATCAGT
TCTGTTCTTTTGTATCGTATGTGCCCTGGGGATGGA

Query= MSMg01no539_k22.g1 MSMg01no539_k22.g1 CHROMAT_FILE:
MSMg01no539_k22.g1 PHD_FILE: MSMg01no539_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:43 2005
         (606 letters)



>mm_chr2_106173474_106174479
          Length = 1006

 Score =  803 bits (415), Expect = 0.0
 Identities = 424/427 (99%)
 Strand = Plus / Minus

                                                                        
Query: 180  gtgcatcaatcacattaactaattttcctgttgtaaactaagcttacattcctggttaaa 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 gtgcatcaatcacattaactaattttcctgttgtaaactaagcttacattcctggttaaa 947

                                                                        
Query: 240  ggtcaaatggcattcattcaaactagccatggtgtactgcaatgcctatagattgctgaa 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  ggtcaaatggcattcattcaaactagccatggtgtactgcaatgcctatagattgctgaa 887

                                                                        
Query: 300  ctcaactcactaatatttcccttaggatgtttgcaaatatttgcaatgggaattaacata 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  ctcaactcactaatatttcccttaggatgtttgcaaatatttgcaatgggaattaacata 827

                                                                        
Query: 360  taaaggccttatattttcttcatcgagggtggcaccaatgtttccttagccttgtgaaat 419
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 826  taaaggccttatattttcttcatcgagggtggcaccaatgtttccttagccttgtgaagt 767

                                                                        
Query: 420  taattggaagacttttctttgtttttgaattctgaattatttgtttcttctgggtttggt 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  taattggaagacttttctttgtttttgaattctgaattatttgtttcttctgggtttggt 707

                                                                        
Query: 480  aaaaatgaatcagtaaattggtcacgatgtacttgtggggagacttaacttttaactttt 539
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 706  aaaaatgaatcagtaaattggtcacaatgtacttgtggggagacttaacttttaactttt 647

                                                                        
Query: 540  tccacggctggtggaccatgctggtttgtggttctttttaactaggatttgcttttttgt 599
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646  tccatggctggtggaccatgctggtttgtggttctttttaactaggatttgcttttttgt 587

                   
Query: 600  tgggagg 606
            |||||||
Sbjct: 586  tgggagg 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)