BAC Information

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BAC

Clone NameMSMg01-539M17
Chromosome2 (Build37)
Map Location 90,511,305 - 90,511,870
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik
Downstream geneNup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539M17.T7 (MSMg01no539_m17.b1)MSMg01-539M17.TJ (MSMg01no539_m17.g1)
ACCAG606201AG606202
length801783
length of high quality
(start - end)		480 (70 - 549)566 (75 - 640)
definitionCHROMAT_FILE: MSMg01no539_m17.b1 PHD_FILE: MSMg01no539_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:52 2005CHROMAT_FILE: MSMg01no539_m17.g1 PHD_FILE: MSMg01no539_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGNGG
AATTCATCCTATCCCACACAAATATATTTTTTGTTTGCAATTTCTTTTTT
TTTCCGTTTCATTTTTTATTAGATATTTTCTTCATTTACATTTCAAATGC
TATCCCAAAATTCCCCTATACCCTCCCTCTGCCCTGCTCCCCAACCCACC
CACTCCCGCTTCCTGGCCATGGCATTCCCCTGTACTGGGGCATATGATCT
TTGCAAGACCAAGGGCCTCTCCTCCCATTGATGGCCGACTAGGCCATCCT
CTGCTACATATGCAACTAGAGACACAGTTCTGGGGATACTGGTTAGTTCA
TATTGTTGATCCTCCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC
TTTCTCTAGCTCCTTCTTTAGAGGCCCTGTGTTCCATCCAATAGATGACT
GTGAGCATCCATTTCTGTATTTGCCAGGCACTGGCATAGCCTCACAACAG
ATAGCTATATCAGGGTCCTGTCAGCAAAACCTTGCTGGCATATGCAATAG
TGTCTAGGTTTGGTGGTTGTATATCACATGGATCCCCGGGTGGGGCAGTC
TCTGGATGGTCCTTTCTTCCATCTCAGCTCTGAACTTTAAGAACACAAAT
ATTTAAAAACATAATTCATAAGGGTGTTCAGTCTTTAAGAAATNNTAACA
AAATATTTGTATTGCCCCTCGAAGACAGGGTGAATGAGGTATAGGATACA
CCTAAACCAAATTATATGCNTGCTTCACTTAGTTAGAGACAAGGCCTATA
C

CGAGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAGAGATCTACCTGCCTCTGCCTCC
CAAATACTGGGATTAAATGTATGTGCCACCCCTACCCACCAAGCAGAAGG
GTTCTAAAAATCTTCCCAGAGCAGATGAGAAGAGAAAAATCACTAAACAG
ATTGGGAAATATCTCCACTGACATTTATTGACATCATTACTTTGCAGAGC
AAGACACAACACTATAACAAGTTGGCCCAGCAGCAAAGAATGACAACCCT
GAAAGTGAGGATAGGTCAGGATGGGATCAACCTAATCCCCCCACTCAGGA
AGCAGAGGCAGTCAGGTCTGAGAGTTCTAGGCCAACCTGGACCACTCAAT
AAGACCCAAGTCGGCCAGGGATACACAGAGAGACCCTGTCTCAAAGAAGA
ATGAATAAAGTAAAATGAAAAGAGACCATTTAAAAAATACTTTGTTTTTG
AGGTAGGGTCTCACTGTGTAGCCCAGAGTAGCCTCAAACTCATGATCCTC
CTGCCTCTGACTGAGTGCTGGGATTACAACTGTGCATACAACTGCCACCA
TACATTGATTGAAATAAAAAGTATTGTTGGAATTATCCTGCGATAATAAC
AAGATGAGAGAGAGATGGAGACAAAAAGATGAGAGACACCGAGTCTGAAA
GAGGGGGATAGTAGGCTCTGTGGTTGTGAATAAAACCCATTGTTGAATGA
GTTTTAATTTTTTCAAGCTACCCTTTTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_m17.g1 MSMg01no539_m17.g1 CHROMAT_FILE:
MSMg01no539_m17.g1 PHD_FILE: MSMg01no539_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:52 2005
         (566 letters)



>mm_chr2_90511105_90512070
          Length = 966

 Score = 1094 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagagatctacctgcctctgcctcccaaatactgggattaaatgtatgtgccaccccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagagatctacctgcctctgcctcccaaatactgggattaaatgtatgtgccaccccta 260

                                                                       
Query: 61  cccaccaagcagaagggttctaaaaatcttcccagagcagatgagaagagaaaaatcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaccaagcagaagggttctaaaaatcttcccagagcagatgagaagagaaaaatcact 320

                                                                       
Query: 121 aaacagattgggaaatatctccactgacatttattgacatcattactttgcagagcaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacagattgggaaatatctccactgacatttattgacatcattactttgcagagcaaga 380

                                                                       
Query: 181 cacaacactataacaagttggcccagcagcaaagaatgacaaccctgaaagtgaggatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaacactataacaagttggcccagcagcaaagaatgacaaccctgaaagtgaggatag 440

                                                                       
Query: 241 gtcaggatgggatcaacctaatccccccactcaggaagcagaggcagtcaggtctgagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcaggatgggatcaacctaatccccccactcaggaagcagaggcagtcaggtctgagag 500

                                                                       
Query: 301 ttctaggccaacctggaccactcaataagacccaagtcggccagggatacacagagagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctaggccaacctggaccactcaataagacccaagtcggccagggatacacagagagac 560

                                                                       
Query: 361 cctgtctcaaagaagaatgaataaagtaaaatgaaaagagaccatttaaaaaatactttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgtctcaaagaagaatgaataaagtaaaatgaaaagagaccatttaaaaaatactttg 620

                                                                       
Query: 421 tttttgaggtagggtctcactgtgtagcccagagtagcctcaaactcatgatcctcctgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttgaggtagggtctcactgtgtagcccagagtagcctcaaactcatgatcctcctgc 680

                                                                       
Query: 481 ctctgactgagtgctgggattacaactgtgcatacaactgccaccatacattgattgaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctgactgagtgctgggattacaactgtgcatacaactgccaccatacattgattgaaa 740

                                     
Query: 541 taaaaagtattgttggaattatcctg 566
           ||||||||||||||||||||||||||
Sbjct: 741 taaaaagtattgttggaattatcctg 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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