NAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTTATATTCCCAATGGCATTAATTCTTTTTTCAATCTCTAAG
AAGTATGTTTAGTCTGGTCCTGCCAGAATAAAATATAATAAGCTCACCAC
TGCTGAATTGCTTGTGTTCCCTAAAGAAAAACAAAACAAAATCCAAGAGT
AAAACCAAGCCTAAATTACCTTTAATGGCTTTAAGATGACTACAGGAGCA
CACTTGACTGAGCAGGAATTACTATCTTAACCACAAAGAGTTTGGTGTAT
GATTTATGCCACACAATAAGATCTCATAGCAGGCATGCCAGATGATAATT
ATATATAAAACTCTATAATTACTATAGCTATTTTACACTGAGGAGCAAAG
ATTTACTATCTTCTTTGTTATTTACATTTTAATAATTTATATGCTGTTCA
CTTACAAATAAGATTAAAGGCAGCCTTCCCTTTTTGTAGGCGTCGTCATA
TGGTGTAAATGCTAAAATATTTCCCCAATACCAAGTACTGGTTTAATCTT
CATTGTGTGCACAGAAACACAGCCAGAGGCTGGCTGACTTCCTTTGGAAC
CTCTGCTCTTTAGCCACAGCTGTCTGTCTTCTGATGGGAATCCTGCCTCT
AGTGACCTCTTTACCTCAGGTGGGTTATCTCCACCCTCATCCAGAAGGAG
TGGCTCTGAATGTCTTGTATGCAAGCTGCAGGCTTGAAAACACTTGGACA

NCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTAATCAT
GAATGGGTGTTGGATCTTGTCAAATGCTTTCTCCGCATATAACAAGATGA
TCATATGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACGGATGAT
GGATTTCAGTATATTAAACCATCCCTGAATCCCTGGAAAAAAACCTACTT
GGTCAGGATGGATGATTGCTTTAATGTGTTCGTGGATTCAGTTAGCGAGA
ATTTTATTGAGTATTTTTGCATTGATATTCATAAGGGAAAATGGTCTGAA
GTTCTCTATCTTTGTTGGATCTATCTGTGGTTTTCTACTTCTATTTTGTG
GAACAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTTATAGA
ACTCTGAACTAAACCCATCTGGTCCTGGGCTTTTTTTAGCTGGGAAACTA
TTAATGACTGCTTCTATTTCTTTAGGGAATATGGGACTCTTTAGATTGTT
AACTTGATCCTGATTTAACTTTGGTACCTGGTATCTGTCTAGAAATTTGT
CCATTTCGTCCATATTTTCCACTTTTGTTGAGTATAGCCTTTTGTAGAAG
GATCTGATGGTGTTTTGGATTTCTTCAGGATCTGTTGCTATGTCTCCCTT
TTCATTTCTGATTTTGTTAAGTAGGATGTTGTCCCTGTGCCC

Query= MSMg01no540_i17.b1 MSMg01no540_i17.b1 CHROMAT_FILE:
MSMg01no540_i17.b1 PHD_FILE: MSMg01no540_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:51 2005
         (541 letters)



>mm_chr2_122533083_122534022
          Length = 940

 Score =  984 bits (509), Expect = 0.0
 Identities = 515/517 (99%), Gaps = 1/517 (0%)
 Strand = Plus / Plus

                                                                       
Query: 23  aatggcattaattcttttttcaatctctaagaagtatgtttagtctggtcctgccagaat 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aatggcattaattcttttttcaatctctaagaagtatgtttagtctggtcctgccagaat 282

                                                                       
Query: 83  aaaatataataagctcaccactgctgaattgcttgtgttccctaaagaaaaacaaaacaa 142
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aaaatataataagctcaccgctgctgaattgcttgtgttccctaaagaaaaacaaaacaa 342

                                                                       
Query: 143 aatccaagagtaaaaccaagcctaaattacctttaatggctttaagatgactacaggagc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aatccaagagtaaaaccaagcctaaattacctttaatggctttaagatgactacaggagc 402

                                                                       
Query: 203 acacttgactgagcaggaattactatcttaaccacaaagagtttggtgtatgatttatgc 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acacttgactgagcaggaattactatcttaaccacaaagagtttggtgtatgatttatgc 462

                                                                       
Query: 263 cacacaataagatctcatagcaggcatgccagatgataattatatataaaactctataat 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cacacaataagatctcatagcaggcatgccagatgataattatatataaaactctataat 522

                                                                       
Query: 323 tactatagctattttacactgaggagcaaagatttactatcttctttgttatttacattt 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tactatagctattttacactgaggagcaaagatttactatcttctttgttatttacattt 582

                                                                       
Query: 383 taataatttatatgctgttcacttacaaataagattaaaggcagccttccctttttgtag 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 taataatttatatgctgttcacttacaaataagattaaaggcagccttccctttttgtag 642

                                                                       
Query: 443 gcgtcgtcatatggtgtaaatgctaaaatatttccccaataccaagtactggtttaatct 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 643 gcgtcgtcatatggtgtaaatgctaaaatatttccccaataccaagtactg-tttaatct 701

                                                
Query: 503 tcattgtgtgcacagaaacacagccagaggctggctg 539
           |||||||||||||||||||||||||||||||||||||
Sbjct: 702 tcattgtgtgcacagaaacacagccagaggctggctg 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 940
Length adjustment: 10
Effective length of query: 531
Effective length of database: 930
Effective search space:   493830
Effective search space used:   493830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)