Query= MSMg01no540_m15.b1 MSMg01no540_m15.b1 CHROMAT_FILE:
MSMg01no540_m15.b1 PHD_FILE: MSMg01no540_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:11 2005
(445 letters)
>mm_chr2_33798857_33799701
Length = 845
Score = 818 bits (423), Expect = 0.0
Identities = 436/441 (98%), Gaps = 2/441 (0%)
Strand = Plus / Plus
Query: 5 gaattctatgttgcaccagacagagatcaagcattaggtaaagagaaagaagaaaccagg 64
|||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctatgatgaa--agacagagatcaagcattaggtaaagagaaagaagaaaccagg 264
Query: 65 agggaaaagagatggtacatatactagcacgtgttactaatatcctgggaaagataaggc 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggaaaagaggtggtacatatactagcacgtgttactaatatcctgggaaagataaggc 324
Query: 125 agcacaggggccataaaataaggtcaaaatgatagaattggaaggaaatgcctaggaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcacaggggccataaaataaggtcaaaatgatagaattggaaggaaatgcctaggaaac 384
Query: 185 acagcggggttgaaaatcaaagggaatccagaagaggtgtgtgtgaggcctcagaaagat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagcggggttgaaaatcaaagggaatccagaagaggtgtgtgtgaggcctcagaaagat 444
Query: 245 tgaggcaagaggattgctatgagttccaggagaacctgggctagagtaagaccctgtctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaggcaagaggattgctatgagttccaggagaacctgggctagagtaagaccctgtctc 504
Query: 305 aaaaacaaaagcaaaaaaggaaggagagaattaatgacaatagatgatgtagttaaaaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaacaaaagcaaaaaaggaaggagagaattaatgacaatagatgatgtagttaaaaac 564
Query: 365 aacaacaacaacaacaataacaaagaacaaacagaaaggatatcatcaaatacatgatac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacaacaacaacaacaataacaaagaacaaacagaaaggatatcatcaaatacatgatac 624
Query: 425 aagaaaaaagttcccatgtca 445
|||||||||||||||||||||
Sbjct: 625 aagaaaaaagttcccatgtca 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_m15.g1 MSMg01no540_m15.g1 CHROMAT_FILE:
MSMg01no540_m15.g1 PHD_FILE: MSMg01no540_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:11 2005
(621 letters)
>mm_chr2_33942086_33943106
Length = 1021
Score = 1178 bits (609), Expect = 0.0
Identities = 618/621 (99%)
Strand = Plus / Minus
Query: 1 atgcccttgtgcttatacagcaagcatctcccatcccccagcttgcttttggagacaggc 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 985 atgcccttgtgcttatacagcaagcatctcccatcctccagcttgcttttggagacaggc 926
Query: 61 tctctcaccaggtctcagtgatccttgattaggctatgctggctggctcgtgagccccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 tctctcaccaggtctcagtgatccttgattaggctatgctggctggctcgtgagccccag 866
Query: 121 ggacctgcctgtctccatctccccaacaccaagatcacaagcatagtgctggaggtcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ggacctgcctgtctccatctccccaacaccaagatcacaagcatagtgctggaggtcaga 806
Query: 181 ctcaggccctcctgtttatgtgcaaattattgactgaactatctcagacatctaaactat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctcaggccctcctgtttatgtgcaaattattgactgaactatctcagacatctaaactat 746
Query: 241 ctcagataagttgggcctgttctctctggacctagctgatgacactggccaggggtacgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcagataagttgggcctgttctctctggacctagctgatgacactggccaggggtacgt 686
Query: 301 gaaaaagatcagattagaactcatgaaagatggaacatgaggaacagataatgaggtctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaaaaagatcagattagaactcatgaaagatggaacatgaggaacagataatgaggtctt 626
Query: 361 ctggacgcttatttaggaggaagctggagaatgggactctctgtgactgtaaggaaaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctggacgcttatttaggaggaagctggagaatgggactctctgtgactgtaaggaaaaag 566
Query: 421 ctttgtggagcaccttgggtttgggagcctagacaagatgacagagctctcaagtcttca 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 ctttgtggagcaccttgggtttgggagcctagacaagatgacagagctctcaagtcgtca 506
Query: 481 gtgcctgggagagctgaagctgagaggacagctgtgctgctccagttggaaagaaatggg 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 gtgcctgggagagctgaagctgagaggacagatgtgctgctccagttggaaagaaatggg 446
Query: 541 gcagccgacgagagcacacacgggagagcctgtgagagaaggaagtttgcaagcacagtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagccgacgagagcacacacgggagagcctgtgagagaaggaagtttgcaagcacagtg 386
Query: 601 ctgaggacagctggccacaga 621
|||||||||||||||||||||
Sbjct: 385 ctgaggacagctggccacaga 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
