AAAAACCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTT
GATTTTCTAAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAG
TCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
GTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGT
TTCATTAGGTCCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGC
TGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCC
CCACTTTCTCCTCTATAAGTTTCAGCGTCTCTGGTTTTATGCGAAGTTCT
TTGATCCTTTTAGATTTGACCTTACTACATGGAGATATAGTATGGATCGA
TTCGCATTCTTCTACATGATAACAACCAGTTGGGCCAGCATCATTTGTTG
AAAATGTTGTTTTTCTTCCCCCGGACGGCTATAGCTCTCTTCGCTAAACA
CTCCGCGACCCATAACTTTGCCCGTCTCCCTCTCTGCGTTTTTTTTCTTC
CTCTTCCTTGGGCCCCCCGTGGATTGCCTCTCTATTCCATGTAGTCCTTG
TTTCTTTTTAAGCATCTCTCACGCCCCGGCTTGTCCATTTTTTTTCCCCT
CCCCCCTTGTGTGCCCCACCACTCCTATTCCCCCTTTTTTTCCACTT

AAATNTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATCTCCACCCATGACAA
AATCAGAGTCCATTCTTTAACCAAAAAAAGTAAACAACAAAGCTTGACAA
CTTTACTTTTGCATATGACAGGTGGGAGGTAAGTTTCAAAGCAGACCCTA
AGGAAGAATTCATTCACAGTTGCCTTCAACCCTAACTATAGCTTGTCAAG
CTACCTAAAACCAATACCTCCTCTTCTCACATCACTAGTCAATGAGCTAG
CTCTACCCTCTCCCTGCTGAAACCAACTCCATCTTTTACTCTTGATCTTC
TTACAACTAGCTGCGAAGAATTTTTTTAACCAAAATTGAGTGCCGTAATA
TTTACTTCAAAGTGTGTTCAATATTTTTGTCTAATAAAACTATACTAGTC
CAGTTCTATATTTTCCAAAAGTAATTAACATCACATGAACTGATTACTTT
TAAATTCCCAAAGTTTCTATAATGTAGGAGACTAGATTAAGAGTTAGATA
CCATAAATTCCTATTCTGTTGATGTTTTAGAATTAACAAAATGTATATTT
GGGGGAATATATAAATCACTTTTGTAAAATATGTGAAGTGAGAAACAATT
TGAAAAAAGAAAAAAAATTAAGGTAACTAGTTATTTTTCCAGTCTTGTTA
TCTTAGTATATTGCATT

Query= MSMg01no540_p03.g1 MSMg01no540_p03.g1 CHROMAT_FILE:
MSMg01no540_p03.g1 PHD_FILE: MSMg01no540_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:24 2005
         (607 letters)



>mm_chr2_39907008_39908016
          Length = 1009

 Score = 1069 bits (553), Expect = 0.0
 Identities = 595/609 (97%), Gaps = 2/609 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatctccacccatgacaaaatcagagtccattctttaaccaaaaaaagtaaacaacaaa 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 acatctccacccatgacaaaatcagagtccattctttaaccaaagaaagtaaacaacaaa 260

                                                                       
Query: 61  gcttgacaactttacttttgcatatgacaggtgggaggtaagtttcaaagcagaccctaa 120
           |||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 261 gcttgacatctttacttttgcatatgacagatgagaggtaagtttcaaagcagaccctaa 320

                                                                       
Query: 121 ggaagaattcattcacagttgccttcaaccctaactatagcttgtcaagctacctaaaac 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ggaagaattcattcacagttgccttcaaccctaactacagcttgtcaagctacctaaaac 380

                                                                       
Query: 181 caatacctcctcttctcacatcactagtcaatgagctagctctaccctctccctgctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatacctcctcttctcacatcactagtcaatgagctagctctaccctctccctgctgaa 440

                                                                       
Query: 241 accaactccatcttttactcttgatcttcttacaactagctgcgaagaatttttttaacc 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accaactccatcttttacttttgatcttcttacaactagctgcgaagaatttttttaacc 500

                                                                       
Query: 301 aaaattgagtgccgtaatatttacttcaaagtgtgttcaatatttttgtctaataaaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 aaaattgagtgccgtaatatttacttcaaagtgtgttcaatatttttgtttaataaaact 560

                                                                       
Query: 361 atactagtccagttctatattttccaaaagtaattaacatcacatgaactgattactttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atactagtccagttctatattttccaaaagtaattaacatcacatgaactgattactttt 620

                                                                       
Query: 421 aaattcccaaagtttctataatgtaggagactagattaagagttagataccataaattcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 621 aaattcccaaagtttctataatgtaggagactagattaagagttagatatcacaaattcc 680

                                                                       
Query: 481 tattctgttgatgtttt-agaattaacaaaatgtatatttgggggaatatataaatcact 539
           |||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 tattctgttgatatttttagaattaacaaaatgtatatttgggagaatatataaatcact 740

                                                                       
Query: 540 tttgtaaaatatgtgaagtgagaaacaatttgaaaaaag-aaaaaaaattaaggtaacta 598
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 741 tttgtaaaatatgtgaagtgagaaacaatttgaaaaatggaaaaaaaattaaggtaacta 800

                    
Query: 599 gttattttt 607
           |||||||||
Sbjct: 801 gttattttt 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1009
Length adjustment: 10
Effective length of query: 597
Effective length of database: 999
Effective search space:   596403
Effective search space used:   596403
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)