BAC Information

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BAC

Clone NameMSMg01-540P14
Chromosome2 (Build37)
Map Location 106,834,554 - 107,000,539
singlet/doubletdoublet
Overlap geneLOC383739, Fshb
Upstream geneDph4, LOC668765, Dcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik
Downstream geneKcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540P14.T7 (MSMg01no540_p14.b1)MSMg01-540P14.TJ (MSMg01no540_p14.g1)
ACCAG607099AG607100
length743754
length of high quality
(start - end)		673 (71 - 743)595 (75 - 669)
definitionCHROMAT_FILE: MSMg01no540_p14.b1 PHD_FILE: MSMg01no540_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:26 2005CHROMAT_FILE: MSMg01no540_p14.g1 PHD_FILE: MSMg01no540_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,999,867 - 107,000,539)(106,834,554 - 106,835,149)
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCAGAGTAATCCGAAATTGTGCATCTACCAGCCCCTACTGCAC
AGCAGCTCATGTTCAACTCTGTAACTCCAGGTAGCCCAATGTTCTAGATG
GCCCAATAGCACTCTTCCTGTGTGTAAATATATGGCCTTGAGGATCACAG
TAATGAAAGGCACTGACGACTGCTTTAAGAGAAGCACATCAGGAATCTGC
ACTGACAACAGCTTAAAAAAGGCAAAGCAACCTGACTCATCCCAGAACTC
TGACCCTTGCAAGGACACAAGCTAGCTACTTCAGTTCAGATGTTTATACA
CAGAATTTAATGTGGTGCCTATACTAGAAATATGAATAAGACACAATAAC
CTCTTTAATCAGTGACTTTAAGGTGAAGTACATAATTAGTTTCTGAAGGC
AGTGACCAAAGAAGATAAAAAGTGAAGCAGCCCAGGCAAGAGGCTGAGAG
TTTTGGAAAGAATTGCTAAATTTCACACCTAGAGATGACAGAAGGAAGCA
GATACAGCTGTGAGGGCCATTAAGAAAGGGTTAATATGTGACGGTTTACA
TCTGACAACATGCATCTCCACTCATACCATGGCTTAGAATTGATAGTCGT
TCATCAGAAATCCCAGAAACTAAATATACCTAATGAAATATAACATGACA
ATGTATTAAAAGTGAGTTCATTTCTTTCTTCACCTCAACCTTG

TCATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATATATCTCAAGAGAAAATGTCTAAA
TAACTTATTACAAGTATATAAATACCTATGAGAGCTAAGAATGCAGAACA
TTCTTTTGTTACTGGTTTATCATTATCCCAAACTGGGCTTGTCACATGGA
TGCTTCCTTTTTGGTCTCCAGGCCTCAGTTCTTTGATCACTCTACTTCCT
TTCTTCCCCCTACCCCTGTTGAGTTTGGATCATTTTTCCTGTCTTAGAAC
CCTCATGCTGGAGAAGCCATGTTCGGTAAATAGCAGTCATCCTTATGGTT
TTAAATGGGACATCTTTAAGGGCTATTTTGAATCCTATTTTGTTAAAGAA
GAGACCAGTAAATCTTTGAGGTCATGAAGTGAAGTTTTTTTTTTTTTTTT
GTGATCTCCCAAGGTCAAGATATCGTCCATATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATATACTTCTTTTTTCTAA
ATATCAGGGTGGCAGCATTCACTTCCTGATATATAATGTTGGCTATTCCT
TGGGAGAGGACTCTTCATTCAAGTCAAGAGGCAAGCCCAGAGATGTTCAT
ATAGGGGACTTTGGAAAAGAAAAACATTGGCAATCTTTGGGGCATAGGGG
AATAGAGAAAAACAATCCTTAGTACCTATGGCCAATAGTAAATCATTGGC
CAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_p14.b1 MSMg01no540_p14.b1 CHROMAT_FILE:
MSMg01no540_p14.b1 PHD_FILE: MSMg01no540_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:26 2005
         (673 letters)



>mm_chr2_106999667_107000739
          Length = 1073

 Score = 1278 bits (661), Expect = 0.0
 Identities = 670/673 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattgtgcatctaccagcccctactgcacagcagctcatgttcaactctgtaactccag 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 aaattgtgcatctaccagaccctactgcacagcagctcatgttcaactctgtaactccag 814

                                                                       
Query: 61  gtagcccaatgttctagatggcccaatagcactcttcctgtgtgtaaatatatggccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gtagcccaatgttctagatggcccaatagcactcttcctgtgtgtaaatatatggccttg 754

                                                                       
Query: 121 aggatcacagtaatgaaaggcactgacgactgctttaagagaagcacatcaggaatctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aggatcacagtaatgaaaggcactgacgactgctttaagagaagcacatcaggaatctgc 694

                                                                       
Query: 181 actgacaacagcttaaaaaaggcaaagcaacctgactcatcccagaactctgacccttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 actgacaacagcttaaaaaaggcaaagcaacctgactcatcccagaactctgacccttgc 634

                                                                       
Query: 241 aaggacacaagctagctacttcagttcagatgtttatacacagaatttaatgtggtgcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aaggacacaagctagctacttcagttcagatgtttatacacagaatttaatgtggtgcct 574

                                                                       
Query: 301 atactagaaatatgaataagacacaataacctctttaatcagtgactttaaggtgaagta 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 atgctagaaatatgaataagacacaataacctctttaatcagtgactttaaggtgaagta 514

                                                                       
Query: 361 cataattagtttctgaaggcagtgaccaaagaagataaaaagtgaagcagcccaggcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cataattagtttctgaaggcagtgaccaaagaagataaaaagtgaagcagcccaggcaag 454

                                                                       
Query: 421 aggctgagagttttggaaagaattgctaaatttcacacctagagatgacagaaggaagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aggctgagagttttggaaagaattgctaaatttcacacctagagatgacagaaggaagca 394

                                                                       
Query: 481 gatacagctgtgagggccattaagaaagggttaatatgtgacggtttacatctgacaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gatacagctgtgagggccattaagaaagggttaatatgtgacggtttacatctgacaaca 334

                                                                       
Query: 541 tgcatctccactcataccatggcttagaattgatagtcgttcatcagaaatcccagaaac 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 333 tgcatctccactcataccatggcttagaattgatagtcgttcatcagaaatcccagaacc 274

                                                                       
Query: 601 taaatatacctaatgaaatataacatgacaatgtattaaaagtgagttcatttctttctt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 taaatatacctaatgaaatataacatgacaatgtattaaaagtgagttcatttctttctt 214

                        
Query: 661 cacctcaaccttg 673
           |||||||||||||
Sbjct: 213 cacctcaaccttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no540_p14.g1 MSMg01no540_p14.g1 CHROMAT_FILE:
MSMg01no540_p14.g1 PHD_FILE: MSMg01no540_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:26 2005
         (595 letters)



>mm_chr2_106834354_106835348
          Length = 995

 Score = 1002 bits (518), Expect = 0.0
 Identities = 575/606 (94%), Gaps = 21/606 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatatctcaagagaaaatgtctaaataacttattacaagtatataaatacctatgagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 atatatctcaagagaaaatgtctaaataacttattacaagtatataaatacttatgagag 260

                                                                       
Query: 61  ctaagaatgcagaacattcttttgttactggtttatcattatcccaaactgggcttgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaagaatgcagaacattcttttgttactggtttatcattatcccaaactgggcttgtca 320

                                                                       
Query: 121 catggatgcttcctttttggtctccaggcctcagttctttgatcactctacttcctttct 180
           ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 catagatgcttcctttttggtctccaggcctcagttctttgatcattctacttcctttct 380

                                                                       
Query: 181 tccccctacccctgttgagtttggatcatttttcctgtcttagaaccctcatgctggaga 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcccctacccctgttgagtttggatcatttttcctgtcttagaaccctcatgctggaga 440

                                                                       
Query: 241 agccatgttcggtaaatagcagtcatccttatggttttaaatgggacatctttaagggct 300
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 agccatgttcggtaaacagcagtcattcttatggttttaaatgggacatctttaagggct 500

                                                                       
Query: 301 attttgaatcctattttgttaaagaagagaccagtaaatctttgaggtcatgaagtgaag 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttgaatcctattttgttagagaagagaccagtaaatctttgaggtcatgaagtgaag 560

                                                                       
Query: 361 ttttttttttttttttgt-----------gatctcccaaggtcaagatatcgtccatata 409
           |||||||||||||||| |           |||||||||||||||||||||||||||||||
Sbjct: 561 tttttttttttttttttttttttttttgggatctcccaaggtcaagatatcgtccatata 620

                                                                       
Query: 410 ataataataataataataataataataataataataataataataataatatacttcttt 469
           ||||||||||||||||||||||||||||||||||||||||||         |||||||||
Sbjct: 621 ataataataataataataataataataataataataataata---------tacttcttt 671

                                                                       
Query: 470 tttctaaatatcagggtggcagcattcacttcctgatatataatgttggctattccttgg 529
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tta-taaatatcagggtggcagcattcacttcctgatatataatgttggctattccttgg 730

                                                                       
Query: 530 gagaggactcttcattcaagtcaagaggcaagcccagagatgttcatataggggactttg 589
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gggaggactcttcattcaagtcaagaggcaagcccagagatgttcatataggggactttg 790

                 
Query: 590 gaaaag 595
           ||||||
Sbjct: 791 gaaaag 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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