Query= MSMg01no540_p19.b1 MSMg01no540_p19.b1 CHROMAT_FILE:
MSMg01no540_p19.b1 PHD_FILE: MSMg01no540_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:27 2005
(686 letters)
>mm_chr2_40719068_40720153
Length = 1086
Score = 1218 bits (630), Expect = 0.0
Identities = 669/682 (98%)
Strand = Plus / Plus
Query: 5 gaattctcagctccttctccagaagcatctttgcctgcatgtttctttccatgatgataa 64
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattctcagctccttctccagaagcatctttgcctgcatgtttcttgccatgatgataa 264
Query: 65 tggactaaacctctgcaattgtaagtcagtctaagttaaatgttttcctttataagagat 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 tggactaaacctctgcaattgtaagtcagtctaagttaactgttttcctttataagagat 324
Query: 125 gctgtggtcatattgcttcatagcaactaattagatgaactattccaatagatggcctat 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctgtggtcatactgcttcatagcaactaattagatgaactattccaatagatggcctat 384
Query: 185 ccccacaaaaatcacatgtcataactaagcaatatgaagtgataataaatgattccattc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccccacaaaaatcacatgtcataactaagcaatatgaagtgataataaatgattccattc 444
Query: 245 aaagacttcactatgctcaaaggaatgacagtaagtccattctattgacaatgctaatta 304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaacttcactatgctcaaaggaatgacagtaagtccattctattgacaatgctaatta 504
Query: 305 tgaataattacaaaaatgaaaattggtaactaacattaattattcagtagatactaaaaa 364
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 tgaataattacaaaaatgaaaattggtaactaatattaattattcagtagatactaaaaa 564
Query: 365 ctagaaaaagtctaaattaaattcactgaatatatctgaaatgactacagaaaattagaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctagaaaaagtctaaattaaattcactgaatatatctgaaatgactacagaaaattagaa 624
Query: 425 ttctaaggttagaataccactgggacattcaccagactacttttcagacagcttaataaa 484
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 625 ttctaaagttagaataccactgggacattctccagactacttctcagacagcttaataaa 684
Query: 485 tatatgtcataaaatcaaacacacaaaatataatataatggaagttagggaactacacag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatatgtcataaaatcaaacacacaaaatataatataatggaagttagggaactacacag 744
Query: 545 gagacaaattcttgaacagtataccagtagttcaggcattaagaccaaaaactaataaat 604
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 745 gagacaaattattgaacagtataccagtagttcaggcattaagactgaaaactaataaat 804
Query: 605 gagacctcataaaatggaaaagcttttacaaggctaaggatactatcaataggacaaaac 664
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 805 gagacctcataaaatggaaaagcttttacgaggctaaggatactatcaataggacaaaac 864
Query: 665 agcagcctacagaatgggaaaa 686
|||||||||||||||| |||||
Sbjct: 865 agcagcctacagaatgagaaaa 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_p19.g1 MSMg01no540_p19.g1 CHROMAT_FILE:
MSMg01no540_p19.g1 PHD_FILE: MSMg01no540_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:27 2005
(651 letters)
>mm_chr2_40884923_40885973
Length = 1051
Score = 495 bits (256), Expect = e-144
Identities = 295/318 (92%), Gaps = 16/318 (5%)
Strand = Plus / Minus
Query: 334 atttttgaaatagctggtctccagtctataagtcatttgaaaactcctcttaatatagag 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 atttttgaaatagctggtctccagtctataagtcatttgaaaactcctcttaatatagag 992
Query: 394 atagatacagaataaatagatagatagatagatagatagatagatagatagatagataga 453
||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 991 atagataca----------------agatagatagatagatagatagatagatagataga 948
Query: 454 tagatagatagatagatagatagatagacagacaggtatattgatagatgatagatagag 513
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 947 tagatagatagatagatagacagacagacagacaggtatattgatagatgatagatagag 888
Query: 514 tgcaagttatgttattctaggtaaccctgcttaatatgggtatatctacatagtactcca 573
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 887 tgcaagttatgttattctagataaccctgcttaatatgggtatatctacatagtattcca 828
Query: 574 atttgtaaatatagcatgatttatgtaactcaactttatatgtggccattagtctataca 633
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 827 atttataaatatagcatgatttatgtaactcaacttgatatgtggccattagtctataca 768
Query: 634 aactgttttcctagttta 651
||||||||| ||||||||
Sbjct: 767 aactgttttgctagttta 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
