ATTTCTCTTTCCCTTTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTG
AGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGGAAATTGGACATAGTACTATCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA
GCCCAAAACTTAGGATACCCAAGATATAAGATACAATTTGTGACACTCAT
GAAACTAAAGAAGAACACAGACCAAAGTTGGAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTAGGACTGCTTTACTAGTCAGCTCACTGCATCTCTCAGGGCT
TCACTCTAAGCTGATCTCTCCTAAGAAAGTCTTTTATTTGTAGTGACAGA
GAAGGATGAGAAATTGCTTAAAGAAAGTTATATAAAAACCAGTATAGTTG
TACTGTAACAGAGTGAGAAATAAAGACAAAAAGAGTGGTGTGGCCAGGGC
CTTTCAAAGGATGGTTTGAAGGAATAGATTATTACTACTTAGAGAGGAAG
CGACTCCATGAACCTCTGTTACCCTCTTTGATTTTTCTTGTACCTGTCTA
TCATAGTTCTGTCGTCAATTTTACTATTAGAATGTTGAACAAATAATGAA
GCAATTAAAACTTAGTCTTCTATCCCATTCTTTAAAAAAGTAATATGAAC
TTTTAATATTTTGAATCATTCATATGAAACCAATATTTTATTTTTTGGAG
GAAAATGAAATTTTTGATCCTAGTTGATCAATGATAAAATAGAATCTTAC
AGAACAACTGGTAAACCACATATTTAGCTTTTACAAGGTCTGAAGTAAAT
AAGTTAAACAACATACTTGATTACTTTTATGAGTAAAACTTAATCAACTT
CTTCACTGGGATTTATTTATCTATGCATTTACTTACTTAGACAGAGTGCT
GTATGTCCC

Query= MSMg01no541_f04.g1 MSMg01no541_f04.g1 CHROMAT_FILE:
MSMg01no541_f04.g1 PHD_FILE: MSMg01no541_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:55 2005
         (547 letters)



>mm_chr2_109100843_109101789
          Length = 947

 Score = 1050 bits (543), Expect = 0.0
 Identities = 546/547 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggactgctttactagtcagctcactgcatctctcagggcttcactctaagctgatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 taggactgctttactagtcagctcactgcatctctcagggcttcactctaagctgatctc 688

                                                                       
Query: 61  tcctaagaaagtcttttatttgtagtgacagagaaggatgagaaattgcttaaagaaagt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 687 tcctaagaaagtcttttatttgtagtgacagagaaggatgagaaattggttaaagaaagt 628

                                                                       
Query: 121 tatataaaaaccagtatagttgtactgtaacagagtgagaaataaagacaaaaagagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tatataaaaaccagtatagttgtactgtaacagagtgagaaataaagacaaaaagagtgg 568

                                                                       
Query: 181 tgtggccagggcctttcaaaggatggtttgaaggaatagattattactacttagagagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgtggccagggcctttcaaaggatggtttgaaggaatagattattactacttagagagga 508

                                                                       
Query: 241 agcgactccatgaacctctgttaccctctttgatttttcttgtacctgtctatcatagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agcgactccatgaacctctgttaccctctttgatttttcttgtacctgtctatcatagtt 448

                                                                       
Query: 301 ctgtcgtcaattttactattagaatgttgaacaaataatgaagcaattaaaacttagtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctgtcgtcaattttactattagaatgttgaacaaataatgaagcaattaaaacttagtct 388

                                                                       
Query: 361 tctatcccattctttaaaaaagtaatatgaacttttaatattttgaatcattcatatgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tctatcccattctttaaaaaagtaatatgaacttttaatattttgaatcattcatatgaa 328

                                                                       
Query: 421 accaatattttattttttggaggaaaatgaaatttttgatcctagttgatcaatgataaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 accaatattttattttttggaggaaaatgaaatttttgatcctagttgatcaatgataaa 268

                                                                       
Query: 481 atagaatcttacagaacaactggtaaaccacatatttagcttttacaaggtctgaagtaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atagaatcttacagaacaactggtaaaccacatatttagcttttacaaggtctgaagtaa 208

                  
Query: 541 ataagtt 547
           |||||||
Sbjct: 207 ataagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)