BAC Information

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BAC

Clone NameMSMg01-541G21
Chromosome2 (Build37)
Map Location 87,814,017 - 87,995,459
singlet/doubletdoublet
Overlap geneOlfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167
Upstream geneOlfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157
Downstream geneOlfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541G21.T7 (MSMg01no541_g21.b1)MSMg01-541G21.TJ (MSMg01no541_g21.g1)
ACCAG607446AG607447
length788780
length of high quality
(start - end)		584 (45 - 628)588 (76 - 663)
definitionCHROMAT_FILE: MSMg01no541_g21.b1 PHD_FILE: MSMg01no541_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:04 2005CHROMAT_FILE: MSMg01no541_g21.g1 PHD_FILE: MSMg01no541_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(87,814,017 - 87,814,597)(87,994,872 - 87,995,459)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAGAGTGGGGCACACAAAAAAGGAATAAAATGGTACCATGGAAGA
TAGTGATGGCTGCCAGATGGGATGCACAGGTGGAGAAAGCCTTACGACGC
CCACTGGCTGAACGCATCTTAAGAACAGTGACAACAATGAACAGGTAAGA
CAACAGAATAAGGAGTAATGTGCTGACAGCATTAAATGTGGCAAAGACAA
ACAGCAGTAATTGACTGATGAGAGTATCAGAGGAAGAAAGGGCTAGTAGT
GAAGAGAGTTCACAGAAGAAGTGATCGATCCTATTGACACCATGAAAAGA
TAATTGCACAGTAGAACACGTCAGTGTCAAGGAACATGTGAACCCCCATG
CGTAGGATCCCACCACCAGTGTGATACAGAGTTTCTGGGACATGGCTACT
GTGTAGAGCAGAGGGTTACAGATAGCCACAAATCGGTCATATGCCATAAC
CACTAATAAAAAGGCTTCAGTTACTACAAAGACACAAAATAAAAAATATT
GTACTATGCATTCTACAAATGAAATGGTTATGTCTTTTGCAACAAGGTTC
ACCAGCATCTTGGGAGCAATGATCGAAGAATAGCAGAAATCCACAAAGGA
GAGGTGGCTGAGGAANGAGTACATANGGGAGTGCAGTTGGGGGATAATTC
TGATCATGAGGATCATACCNATATTTCCTACCACAGTGATTGCTGTAATG
ACGAGAAACACCAGAAGAAGAGGACTTTAGGTCAGGAT

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCAGGGTTTATGTCTCAAGTGTCA
AGCAGTTACAGATGAAACAATAAACAATATCATGAAATAAATTTTCAGGT
TTCAGTCTTCTGCATGACTCCTAATTGTTCTTCAGAAATATTTTCCAGTT
GCTAAAATATTAGTATTTGTATATTCAGTTGAATTCTATTTCACTGATTA
ATTGCTATTGTAGCTGGGAAAATTATAAAAACATTTTAATTTTGACGTAA
AGTATACATGTGGTTTATTAATTGTATTAACATTATCAAAAATGGATATC
AGGAAAGACTCTATTTTGGTGAGTTACTTTAAAGTTGTCTCTGTTTTCAG
TCTGTGGATGTACACAGGATCCACATACTAGAGAGAAGGGTAAAACAGTG
TGAGCTATTTTATTTAATGATGCATATTTGAGTATTAAACTTGAAGCATA
TTTTTCATTTCCACTGTACTAAATTTAAAGCTGTTTTCTTACTGTTAAGT
TATTGTTCAAAAAATTAAACCAATTGTTACCTAAAAGTTTATCCTAATGA
CTTTAGTGAATTTATATGCAGTATATAAAGCCCACAAAATATGTCCAATT
AAAGTAACAGTGTATGAAGCATATTATATAAAACCGAATATAATAATTGC
AAATAAAAATGAAGTTGTAGTAAAAATGCTGGGATTGATAAAGAAAAAAG
CAGTTTCTGAGAAGTGCTGTGTACAAAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_g21.b1 MSMg01no541_g21.b1 CHROMAT_FILE:
MSMg01no541_g21.b1 PHD_FILE: MSMg01no541_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:04 2005
         (584 letters)



>mm_chr2_87813814_87814797
          Length = 984

 Score = 1077 bits (557), Expect = 0.0
 Identities = 575/581 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttagagtggggcacacaaaaaaggaataaaatggtaccatggaagatagtgat 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttagagttgggcacacaaaaaaggaataaaatggtaccatggaagatagtgat 263

                                                                       
Query: 64  ggctgccagatgggatgcacaggtggagaaagccttacgacgcccactggctgaacgcat 123
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggctgccaggtgggatgcacaggtggagaaagccttacgacgcccactggctgaacgcat 323

                                                                       
Query: 124 cttaagaacagtgacaacaatgaacaggtaagacaacagaataaggagtaatgtgctgac 183
           |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 cttaaggacagtgacaacaatgaacaggtaagacagcagaataaggagtaatgtgctgac 383

                                                                       
Query: 184 agcattaaatgtggcaaagacaaacagcagtaattgactgatgagagtatcagaggaaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcattaaatgtggcaaagacaaacagcagtaattgactgatgagagtatcagaggaaga 443

                                                                       
Query: 244 aagggctagtagtgaagagagttcacagaagaagtgatcgatcctattgacaccatgaaa 303
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagggctagcagtgaagagagttcacagaagaagtgatcgatcctattgacaccatgaaa 503

                                                                       
Query: 304 agataattgcacagtagaacacgtcagtgtcaaggaacatgtgaacccccatgcgtagga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agataattgcacagtagaacacgtcagtgtcaaggaacatgtgaacccccatgcgtagga 563

                                                                       
Query: 364 tcccaccaccagtgtgatacagagtttctgggacatggctactgtgtagagcagagggtt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcccaccaccagtgtgatacagagtttctgggacatggctactgtgtagagcagagggtt 623

                                                                       
Query: 424 acagatagccacaaatcggtcatatgccataaccactaataaaaaggcttcagttactac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acagatagccacaaatcggtcatatgccataaccactaataaaaaggcttcagttactac 683

                                                                       
Query: 484 aaagacacaaaataaaaaatattgtactatgcattctacaaatgaaatggttatgtcttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaagacacaaaataaaaaatattgtactatgcattctacaaatgaaatggttatgtcttt 743

                                                    
Query: 544 tgcaacaaggttcaccagcatcttgggagcaatgatcgaag 584
           |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 744 tgcaacaaggttcaccagcatcttgggagcaatgatggaag 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no541_g21.g1 MSMg01no541_g21.g1 CHROMAT_FILE:
MSMg01no541_g21.g1 PHD_FILE: MSMg01no541_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:04 2005
         (588 letters)



>mm_chr2_87994672_87995659
          Length = 988

 Score = 1075 bits (556), Expect = 0.0
 Identities = 580/588 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagggtttatgtctcaagtgtcaagcagttacagatgaaacaataaacaatatcatga 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 788 ctcagggtttatgtctcaagtgtcacgcagttacagatgaaacaataaacaatatcatga 729

                                                                       
Query: 61  aataaattttcaggtttcagtcttctgcatgactcctaattgttcttcagaaatattttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aataaattttcaggtttcagtcttctgcatgactcctaattgttcttcagaaatattttc 669

                                                                       
Query: 121 cagttgctaaaatattagtatttgtatattcagttgaattctatttcactgattaattgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cagttgctaaaatattagtatttgtatattcagttgaattctatttcactgattaattgc 609

                                                                       
Query: 181 tattgtagctgggaaaattataaaaacattttaattttgacgtaaagtatacatgtggtt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 608 tattgtagctgggaaaattataaaaacattttaattttgacgtaaactatacatgtggtt 549

                                                                       
Query: 241 tattaattgtattaacattatcaaaaatggatatcaggaaagactctattttggtgagtt 300
           ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 548 tattaattgtattaacattatcaaaaatgaatatcaggaaagaccctattttggtgagtt 489

                                                                       
Query: 301 actttaaagttgtctctgttttcagtctgtggatgtacacaggatccacatactagagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 actttaaagttgtctctgttttcagtctgtggatgtacacaggatccacatactagagag 429

                                                                       
Query: 361 aagggtaaaacagtgtgagctattttatttaatgatgcatatttgagtattaaacttgaa 420
           ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aagtgtaaaccagtgtgagctattttatttaatgatgcatatttgagtattaaacttgaa 369

                                                                       
Query: 421 gcatatttttcatttccactgtactaaatttaaagctgttttcttactgttaagttattg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gcatatttttcatttccactgtactaaatttaaagctgttttcttactgttaagttattg 309

                                                                       
Query: 481 ttcaaaaaattaaaccaattgttacctaaaagtttatcctaatgactttagtgaatttat 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 308 ttcaaaaaattaaaccaattgttacctaaaagtttatcctaatgtctttagtgaatttat 249

                                                           
Query: 541 atgcagtatataaagcccacaaaatatgtccaattaaagtaacagtgt 588
           |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 248 atgcagtatataaagcccacaaaacatgtccaattaaagtaacagtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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