Query= MSMg01no541_i03.b1 MSMg01no541_i03.b1 CHROMAT_FILE:
MSMg01no541_i03.b1 PHD_FILE: MSMg01no541_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:11 2005
(593 letters)
>mm_chr2_160100721_160101715
Length = 995
Score = 1050 bits (543), Expect = 0.0
Identities = 581/599 (96%), Gaps = 10/599 (1%)
Strand = Plus / Plus
Query: 5 gaattcactgatgttcccatatgactactctttttaaactacaaccccccaaagagcaca 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattcactgatgtgaccatatgactactctttttaaactacaaccccccaaagagcaca 256
Query: 65 gcatgcctctttctgtgcaatcttgcaagcccaggccctggtgcagagcagctcatagca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcatgcctctttctgtgcaatcttgcaagcccaggccctggtgcagagcagctcatagca 316
Query: 125 ttaaatggaaagatgag--------tcaatgaatcaatgaatcaatgaatgaggatcagt 176
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 317 ttaaatggaaagatgagtcaatgaatcaatgaatcaatgaatcaatgaatgaggatcagt 376
Query: 177 tcatatatgggcgttggctgaggtcccttatttagcaatcaagagagacgggagaactgg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcatatatgggcgttggctgaggtcccttatttagcaatcaagagagacgggagaactgg 436
Query: 237 atgagctaggaatgaacagtggagggaagagttgttgaaagattaataaccctatgctga 296
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 437 atgagctaggaatgaacagtggagggaagagttgttgaaagattaagaaccctatgctga 496
Query: 297 gacatcccattgtctctcttcaactggcaaggccccgttgtcatcggcttatttctgcac 356
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gacatcccattgtctctctgcaactggcaaggccccgttgtcatcggcttatttctgcac 556
Query: 357 caaggaaggatataaattatgcctattccctttcagaccaatggcacaacacattcacct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caaggaaggatataaattatgcctattccctttcagaccaatggcacaacacattcacct 616
Query: 417 tctcactttgggaaccttagatagttctctagattcctcagaaatggggagagtgcatca 476
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 617 tctcactttgggaatcttagatagttctctagattcctcagaaattgggagagtgcatca 676
Query: 477 aggagacagaaagaaggatgggtttgttacagtcacttctccaaggaagaaaccagagaa 536
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aggagacagaaagaaggatgtgtttgttacagtcacttctccaaggaagaaaccagagaa 736
Query: 537 cagaagcaagtatacatgtatatgtatgtgtgtgtgtg--cacaaatgggtagacagag 593
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 737 cagaagcaagtatacatgtatatgtatgtgtgtgtgtgtgcacaaaggggtagacagag 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 995
Length adjustment: 10
Effective length of query: 583
Effective length of database: 985
Effective search space: 574255
Effective search space used: 574255
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_i03.g1 MSMg01no541_i03.g1 CHROMAT_FILE:
MSMg01no541_i03.g1 PHD_FILE: MSMg01no541_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:11 2005
(593 letters)
>mm_chr2_160293537_160294529
Length = 993
Score = 1036 bits (536), Expect = 0.0
Identities = 548/552 (99%), Gaps = 1/552 (0%)
Strand = Plus / Minus
Query: 43 agacaacccttcctgtctactatgggaagacacagcaagaaggtgctgtgtatataaaaa 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 agacaacccttcctgtctactatgggaagacacagcaagaaggtgctgtgtatataaaaa 934
Query: 103 agtatgttctcattaaatgcttgacataaccagacttgtgggtgccctgatcaagacgtc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 agtatgttctcattaaatgcttgacataaccagacttgtgggtgccctgatcaagacgtc 874
Query: 163 tccacctctatgactgt-aaaaaaattaactttctgtcatatataagccaccaagtttat 221
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tccacctctatgactgtaaaaaaaattaactttctgtcatatataagccaccaagtttat 814
Query: 222 ggtatttactcatgatagcctgcattggggggtgagtatgggaagggagcatagagggcc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ggtatttactcatgatagcctgcattggggggtgagtatgggaagggagcatagagggcc 754
Query: 282 tacttataccctaccctccagtaaaatgatgcaattgtctctttctgcccttccaccttt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tacttataccctaccctccagtaaaatgatgcaattgtctctttctgcccttccaccttt 694
Query: 342 tattccaaagaaggaatagctttgagctgcagagggtctggatgctgagaaggtgatctg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tattccaaagaaggaatagctttgagctgcagagggtctggatgctgagaaggtgatctg 634
Query: 402 gagagatgcagcatgggaaggagggagaaaacaaagagtgtgctatagtgggctgcaggt 461
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gagaaatgcagcatgggaaggagggagaaaacaaagagtgtgctatagtgggctgcaggt 574
Query: 462 tttcacaggatgttggagagcttgatgtggcttgaaaactctagagccttgtgggaatct 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tttcacaggatgttggagagcttgatgtggcttgaaaactctagagccttgtgggaatct 514
Query: 522 gtatgccccttatctccgagctgttgcagtcagctgggcctgtttctacctgctgtactc 581
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 513 gtatgccccttatctccgagctgttgcagtcagctgtgtctgtttctacctgctgtactc 454
Query: 582 tgctagtgatgt 593
||||||||||||
Sbjct: 453 tgctagtgatgt 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
