Query= MSMg01no541_l01.b1 MSMg01no541_l01.b1 CHROMAT_FILE:
MSMg01no541_l01.b1 PHD_FILE: MSMg01no541_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:26 2005
(585 letters)
>mm_chr2_35738288_35739276
Length = 989
Score = 1077 bits (557), Expect = 0.0
Identities = 575/583 (98%), Gaps = 4/583 (0%)
Strand = Plus / Plus
Query: 5 gaattctttggcatcagctgaacttcaggatttcaaccaaagttcagctgtgtatacaca 64
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattctttggcatcagctgaacttcaggatttcaaccaaaggtcagctgtgtatacaca 264
Query: 65 cagatggaccagtctgttggagagggagatggttcctctggaagagtctgttcccagaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagatggaccagtctgttggagagggagatggttcctctggaagagtctgttcccagaag 324
Query: 125 catgatcaccagcaggaggatgctgccccttttgttaggatggcacgcttagtgcacata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catgatcaccagcaggaggatgctgccccttttgttaggatggcacgcttagtgcacata 384
Query: 185 gttctggaaaggtggctcaagagttaagagtgctggctactttttcaaacaactggggtt 244
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 gttctggaaaggtggctcaagagttaagagtgctggctactttttcagacaactggggtt 444
Query: 245 caattcctagcactcacatgtagctagcaaccatttctaactccagtttcaggggaatct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caattcctagcactcacatgtagctagcaaccatttctaactccagtttcaggggaatct 504
Query: 305 gacaccctctcctggcctccgtgggcactgactgcatcatagacatgcagggcaaagcgt 364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacaccctctcctggcctcagtgggcactgactgcatcatagacatgcagggcaaagcgt 564
Query: 365 ccatatacataaaataaaaatagtaagccttttaataaatgaattcatcattcctattat 424
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 565 ccatatacataaaataaaaatagtaagccttttaataaatgaattcatcatttctattat 624
Query: 425 tactcagtactgccaatgcaagcgggaggagtctgagcttatgagcgttctgattcatgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tactcagtactgccaatgcaagcgggaggagtctgagcttatgagcgttctgattcatgt 684
Query: 485 gcttcctc----ttctcgaggacaggacaaagccacactccttggtcacactcagaatcc 540
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcttcctccctcttctcgaggacaggacaaagccacactccttggtcacactcagaatcc 744
Query: 541 cagctatgccaactgtgtgcctgggaggttcctcttctcagtt 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagctatgccaactgtgtgcctgggaggttcctcttctcagtt 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 989
Length adjustment: 10
Effective length of query: 575
Effective length of database: 979
Effective search space: 562925
Effective search space used: 562925
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_l01.g1 MSMg01no541_l01.g1 CHROMAT_FILE:
MSMg01no541_l01.g1 PHD_FILE: MSMg01no541_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:26 2005
(497 letters)
>mm_chr2_35929395_35930290
Length = 896
Score = 901 bits (466), Expect = 0.0
Identities = 490/498 (98%), Gaps = 3/498 (0%)
Strand = Plus / Minus
Query: 1 tttcaggaaacattaagttcctttagtggaaggctgtggggctggaaaagagcctatcta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 696 tttcaggaaacattaagttcctttagtggaaggctgtggggctggaaaagag-ctatcta 638
Query: 61 tggctttacttgtccagagacaaggagcctcatgacctgtgtgggctgggccctcctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tggctttacttgtccagagacaaggagcctcatgacctgtgtgggctgggccctcctgcc 578
Query: 121 tctcaggccctgtctggatgataatcttccctagtgaggaagccaaggtcatggctgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tctcaggccctgtctggatgataatcttccctagtgaggaagccaaggtcatggctgctc 518
Query: 181 cacacagattggagcagccatgtcatcagggtctagcatcgatccagcacatttaaagca 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 caaacagattggagcagccatgtcatcagggtctagcatcgatccagcacatttaaagca 458
Query: 241 cttaataatacctacatggtgaactaattaataaagaaatgtaaatttggggacataaaa 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cttaataatacctacatggtaaactaattaataaagaaatgtaaatttggggacataaaa 398
Query: 301 gtaacagatttactctctgggactgagatcaaaagagaatatcctcccctccttgaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtaacagatttactctctgggactgagatcaaaagagaatatcctcccctccttgaacaa 338
Query: 361 agtgagcttctcagagggtagggaggcacgccaagtgcaggtccaagactgccagctgca 420
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 337 agtgagcttctcagagggtagggaggcatgccaagtgcaggtccaagactgccagctgcg 278
Query: 421 gctgacttgtg-tcctgaggccttgggttgggtaccttaccacctggctttggatcatac 479
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 277 gctgacttgtgat-ctgaggccttgggttgggtgccttaccacctggctttggatcatac 219
Query: 480 ctgaggactaaccacttt 497
||||||||||||||||||
Sbjct: 218 ctgaggactaaccacttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space: 431482
Effective search space used: 431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
