Query= MSMg01no542_h08.b1 MSMg01no542_h08.b1 CHROMAT_FILE:
MSMg01no542_h08.b1 PHD_FILE: MSMg01no542_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:30 2005
(596 letters)
>mm_chr2_72684429_72685424
Length = 996
Score = 654 bits (338), Expect = 0.0
Identities = 378/396 (95%), Gaps = 11/396 (2%)
Strand = Plus / Minus
Query: 4 ggaattctgcgaaggatgagcgtaggagggaaagcgtcacggctgctaccgatcctgtgt 63
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 392 ggaattctgggaaggatgagcgtaggagggaaagcgtcacggctgctaccgattctgcgt 333
Query: 64 gtatcttcagtcacagatgaatgttggatgtccctttctagtgactaacaatacagtcta 123
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 332 gtatcttcagtcacggatgaatgttggatgtccctttctagtgaccaacaatacagtcta 273
Query: 124 catatttttctgaatacatatttctaaactaggaaaaggtaaaagaaaaaatggaatgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 catatttttctgaatacatatttctaaactaggaaaaggtaaaagaaaaaatggaatgaa 213
Query: 184 gtatatatat-t-ttttaactctttattgattctgtgtgaattttacatcatacacctca 241
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gtatatatatatattttaactctttattgattctgtgtgaattttacatcatacacctca 153
Query: 242 atcccattcatctcctccccccccccgcaaataaaaataaataaaataaaata-----gc 296
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 152 atcccattcatctcctcccccc----gcaaataaaaataaataaaataaaataaaatagc 97
Query: 297 aatataaaggtcttgctgtggaagctatggtgtaccacagtgtaccctttggtccataca 356
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 aatataaaggtcttgttgtggaagctatggtgtaccacagtgtaccctttggtccataca 37
Query: 357 tctttacttgcaaatgctcattgcagtgagtcattg 392
||||||||||||||||||||||||| ||||||||||
Sbjct: 36 tctttacttgcaaatgctcattgcaatgagtcattg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_h08.g1 MSMg01no542_h08.g1 CHROMAT_FILE:
MSMg01no542_h08.g1 PHD_FILE: MSMg01no542_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:30 2005
(655 letters)
>mm_chr2_72514817_72515873
Length = 1057
Score = 1239 bits (641), Expect = 0.0
Identities = 653/657 (99%), Gaps = 2/657 (0%)
Strand = Plus / Plus
Query: 1 cacagaggacgtgtaggcaattgtaagtttctttcaaactcggcctctgtctgtcatacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagaggacgtgtaggcaattgtaagtttctttcaaactcggcctctgtctgtcatacc 260
Query: 61 tatgtagttacaaaatcaaaggggataataaagttcaattgtatattcacagtttgatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtagttacaaaatcaaaggggataataaagttcaattgtatattcacagtttgatag 320
Query: 121 ttctattgataggtctcacacacacaaaaaaa-cgccatttcgggaaactgaatctgtgt 179
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ttctattgataggtctcacacacacaaaaaaaacgccatttcgggaaactgaatctgtgt 380
Query: 180 ccctccatgaaaagctctgaaagactctcctggatggccagtccccacccagaaatccct 239
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctccataaaaagttctgaaagactctcctggatggccagtccccacccagaaatccct 440
Query: 240 ccaaatctcagcctatgaagtggccccagcgaggttcaaaggtgtcaaattgggtctcct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaatctcagcctatgaagtggccccagcgaggttcaaaggtgtcaaattgggtctcct 500
Query: 300 ctccccaggttctgcctgtggttttaaaatatccttctgatgatggcaagaaggaaagga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctccccaggttctgcctgtggttttaaaatatccttctgatgatggcaagaaggaaagga 560
Query: 360 aaacacccagagcaagacacaactgaattaaaatccagttcctgagtagagagccattaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacacccagagcaagacacaactgaattaaaatccagttcctgagtagagagccattaa 620
Query: 420 cccaaccatcaccacggcactgacgg-aggaacggattccttgtgaggtaccagacaggg 478
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 cccaaccatcaccacggcactgacgggaggaacggattccttgtgaggtaccagacaggg 680
Query: 479 ctaggctgagagccagcctcctccctgccctacatccttgcctcaggaaccgagaccctg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaggctgagagccagcctcctccctgccctacatccttgcctcaggaaccgagaccctg 740
Query: 539 ccaactctgaaggattttctcatttttaaaaacatcaatgtattttgctactacagaaat 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaactctgaaggattttctcatttttaaaaacatcaatgtattttgctactacagaaat 800
Query: 599 attctcagaggcactagaaaatcagcacgcaggtgcctctattttttttttttttta 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attctcagaggcactagaaaatcagcacgcaggtgcctctattttttttttttttta 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1057
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1047
Effective search space: 675315
Effective search space used: 675315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
