Query= MSMg01no542_l01.b1 MSMg01no542_l01.b1 CHROMAT_FILE:
MSMg01no542_l01.b1 PHD_FILE: MSMg01no542_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:48 2005
(683 letters)
>mm_chr2_47211776_47212859
Length = 1084
Score = 1133 bits (586), Expect = 0.0
Identities = 640/669 (95%), Gaps = 19/669 (2%)
Strand = Plus / Minus
Query: 17 atgtaatgcttctaaggtatacctctgtgatagttatgactattattattattataacta 76
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 atgtaatgtttctaaggtatacctctgtgatagttatgactattattattattataacta 1025
Query: 77 ctactggtgtgctgctaaggagtaacagtctatagtattaacagtctatagtattaacat 136
|||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1024 ctactgctgtgctgctaaggag----------------taacagtctatagtattaacat 981
Query: 137 aagcagatttttcattttcttgtaagtggatattaggtttgtttccagattgagggtatt 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 aagcagatttttcattttcttgtaagtggatattaggtttgtttccagattgagggtatt 921
Query: 197 aaaaatgctacatgattatacttggaaatgtcttttccatatgttatttgcatgcatttt 256
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 920 aaaaatgctacatgattatacttgtaaatgtcttttccatatgttatttgcatgtatttt 861
Query: 257 cataagatttatgtacacatgtatacataactactcgtttgtaagaaaattccaaagggc 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 cataagatttatgtacacatgtatacataactactcgtttgtaagaaaattccaaagggc 801
Query: 317 tgtaccactttcttcttgcacatcagtttgtgattattgtatcactcttcatttgcaaac 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tgtaccactttcttcttgcacatcagtttgtgattattgtatcactcttcatttgcaaac 741
Query: 377 ttgggttttggcctctttcttttttctttatgcattctggggagaggagtttaatagcat 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttgggttttggcctctttcttttttctttatgcattctggggagaggagtttaatagcat 681
Query: 437 gtctttggatcttttgtatttttttctgattattgatatttagggattttgtgtatcagt 496
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 680 gtctttggatcttttgtatttttttctgattattgatatttagg-attttgtgtattagt 622
Query: 497 tactcaaattgcttttaaaagttcacacacacacacaggttgtgttcattatttaaataa 556
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacttaaattgcttttaaaagttcacacacacacacaggttgtgttcattatttaaataa 562
Query: 557 aatctttcttcaagcaacagtgttaaaacaatcattctcagtataattaanaac--tttt 614
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 561 aatctttcttcaagcaacagtgttaaaacaatcattctcagtataattaaaaaaattttt 502
Query: 615 tttgcatatgatgtgtgcatgtgtttatatgaatgtaacacgtggaggcatatgtctgta 674
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 tttgcatatgatgtgtgcgtgtgtttttatgaatgtaacacgtggaggcatatgtctgta 442
Query: 675 aaggcttaa 683
|||||||||
Sbjct: 441 aaggcttaa 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1084
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1074
Effective search space: 722802
Effective search space used: 722802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_l01.g1 MSMg01no542_l01.g1 CHROMAT_FILE:
MSMg01no542_l01.g1 PHD_FILE: MSMg01no542_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:48 2005
(587 letters)
>mm_chr17_54613869_54614855
Length = 987
Score = 677 bits (350), Expect = 0.0
Identities = 438/490 (89%), Gaps = 42/490 (8%)
Strand = Plus / Minus
Query: 99 cagatttaggattggtaaagatctttttcccagtgttttggttgcaatttgttttcctct 158
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 983 cagatttaggattggtaaagatc-ttttcccagtgttttggttgcaatttgtttccctct 925
Query: 159 tctttcttactcttcattgtcctcctcttcctgctcctcctcctcttcctcctcctcctc 218
|||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct: 924 tctttcttactcttcattgttctcctc------ctcctcctcc---tcctcctcctcctc 874
Query: 219 ctcctcctcttcttcttctttttctttttctttttcttcttcttcttcttcttcttcttc 278
||||||| ||||||||||||||||||||| | ||
Sbjct: 873 ctcctcc---------------------------tcttcttcttcttcttcttctac-tc 842
Query: 279 ttcttcttcttcttcttctcctcct-cttcctcttcatcctcctcctcctcctcctgctt 337
||||| || || || |||||||| ||| |||||| ||||||||||||||||||| |||
Sbjct: 841 ctcttcgtc--ctcctcctcctcctcctt-ctcttcctcctcctcctcctcctcctcctt 785
Query: 338 ttttgcccttgattctgtagctagataaaatacagaagtttatgagttgattgtagaatt 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ttttgcccttgattctgtagctagataaaatacagaagtttatgagttgattgtagaatt 725
Query: 398 ggggaaaggaaagaaagaaaaatataacaattcattataaaggtctttacctcaggcaga 457
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 724 ggggaaaggaaagaaagaaaaaaataacaattcattataaaggtctttacctcaggcaga 665
Query: 458 cttaaccagcatgttaataaatttaaatgtaaatctgagtttccttcctgatggaatggt 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cttaaccagcatgttaataaatttaaatgtaaatctgagtttccttcctgatggaatggt 605
Query: 518 gtgatatactactttcaattgtttattatggaaattatggcaggtaggaaaaatatcatt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gtgatatactactttcaattgtttattatggaaattatggcaggtaggaaaaatatcatt 545
Query: 578 tgcagaggat 587
||||||||||
Sbjct: 544 tgcagaggat 535
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
