CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTATTTTAATTGAATTCACACACTTAGTTGTTGTAACAAACCTAA
ATCTATTAATTTAAGATGCTAACCTCTGTGGCTTGGACATTTGTGCTCAC
TCCAAAATTTATATTATAATTTAATCTTTATTATGATAGTATTAAGCAAG
AGTTGTTATGAAGTGATAAACTAATGTGAATGAAACTCCAATGAAAAGGA
TTATCTACTTCATAAAAATCGGTAAAAGGAGCTGGATAGACTTTTTCTTT
TTCTTCAATGTTCCTCCAATTATCATAGGAAGACCTAAGGTTTATTATTA
TTGGAGAATACAGCAACAAGGTACCACTTTGGAAATAGAAGGCACCATTT
ACCATCAAATATCTATAGCACTGAACTTGGATTTTTCTCATGATTGTAAA
AAACAAATTTATATGTTTTATAAATTATCCAGTCTCAGACAATTTTAAAA
TATATTCTATTTTTTGCGGGGGAGTTGAGTTTATAATATAATTATATAAC
ACTCTTCCCTTTCCTCTATCTAAACCTTCTATGCTCTGCTTCAAATACAT
GACCTATTTTTCATTATTACACACATATATTATGTACAGACATATTTGTA
AATATGCTCAGTCCTATAGCCTATCTGTCTCTCTGTCTCTGCCTCTGTCT
CTTTGTCTCTGTCTCTGCCCCCATTTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTNNN

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCGTATTCTCTTTACCATTCTTA
TACATATTTCAGAATAGGTGTTTTGTAGCCCTTGTTTTGTGCCCCAGCTA
TAATGCATTTCTCTGGACATAGTATACAAGTGTTCCTAGACTCTAATGGA
TAATCACAGTCTTGGCTGCTGTTGTCTCTGTTCTGTTGCTGGTCATCTAG
ATGTGTCAGTTTGTGATGACTGCAATTCTAGTTGTTGATATCTAGCCTTG
TCTTTGTTGGGTGGGTAATCAAATTATTGCTTCTGTTATTCTTTGTGTCT
ATCTAGAGAGTGCTGTAGCTGTCAGTTGCTAGTAGAGAATACTTCTGAGA
CTCAGCCAGGTATGGCTACCCTAGGTCCCATGGAAAAAAAGTCTCTAGAT
ATTAGGTAAAAACACAAATGAATTAGGATAGAATAGACAGGGATATCTGA
GAGTCCACATGAGGGAGGAAAGCTGGTTATTTTTCCATGTTGATCTGTAT
CATCTCTGGGAAAGGGTGAAATTAGAAAGGAGAAAGAAAATCTGGTAGTC
TGTTAAAAAGCAAGAGATAAAACAGGGAAATTGGAATTGGAGGAATGCAG
GGAGCATGAAAATTGATGACCTGATTTTCTAGCCTGCATATAATATATAT
ATATTATATAAGGCTCAAGTGTGTAAGATGCTAGCTATCCCATTTAGTTA
TGCAATTCACTTTCAAGAATATGCTN

Query= MSMg01no543_a20.b1 MSMg01no543_a20.b1 CHROMAT_FILE:
MSMg01no543_a20.b1 PHD_FILE: MSMg01no543_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:17 2005
         (729 letters)



>mm_chr2_96028807_96029935
          Length = 1129

 Score = 1100 bits (569), Expect = 0.0
 Identities = 575/577 (99%), Gaps = 1/577 (0%)
 Strand = Plus / Minus

                                                                        
Query: 151  agcaagagttgttatgaagtgataaactaatgtgaatgaaactccaatgaaaaggattat 210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1129 agcaagagttgttatgaagtgataaactaatgtgaatgaaactccaatgaaaaggattat 1070

                                                                        
Query: 211  ctacttcataaaaatcggtaaaaggagctggatagactttttctttttcttcaatgttcc 270
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 ctacttcat-aaaatcggtaaaaggagctggatagactttttctttttcttcaatgttcc 1011

                                                                        
Query: 271  tccaattatcataggaagacctaaggtttattattattggagaatacagcaacaaggtac 330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 tccaattatcataggaagacctaaggtttattattattggagaatacagcaacaaggtac 951

                                                                        
Query: 331  cactttggaaatagaaggcaccatttaccatcaaatatctatagcactgaacttggattt 390
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 950  cactttggaaatagaaggcaccatttaccatcaaatatctatagcactgaccttggattt 891

                                                                        
Query: 391  ttctcatgattgtaaaaaacaaatttatatgttttataaattatccagtctcagacaatt 450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  ttctcatgattgtaaaaaacaaatttatatgttttataaattatccagtctcagacaatt 831

                                                                        
Query: 451  ttaaaatatattctattttttgcgggggagttgagtttataatataattatataacactc 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  ttaaaatatattctattttttgcgggggagttgagtttataatataattatataacactc 771

                                                                        
Query: 511  ttccctttcctctatctaaaccttctatgctctgcttcaaatacatgacctatttttcat 570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  ttccctttcctctatctaaaccttctatgctctgcttcaaatacatgacctatttttcat 711

                                                                        
Query: 571  tattacacacatatattatgtacagacatatttgtaaatatgctcagtcctatagcctat 630
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  tattacacacatatattatgtacagacatatttgtaaatatgctcagtcctatagcctat 651

                                                                        
Query: 631  ctgtctctctgtctctgcctctgtctctttgtctctgtctctgcccccatttctctctct 690
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  ctgtctctctgtctctgcctctgtctctttgtctctgtctctgcccccatttctctctct 591

                                                 
Query: 691  ctctctctctctctctctctctctctctctctctctc 727
            |||||||||||||||||||||||||||||||||||||
Sbjct: 590  ctctctctctctctctctctctctctctctctctctc 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 22
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1129
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1119
Effective search space:   804561
Effective search space used:   804561
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)