BAC Information

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BAC

Clone NameMSMg01-543C10
Chromosome2 (Build37)
Map Location 74,134,224 - 74,134,633
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
Downstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543C10.T7 (MSMg01no543_c10.b1)MSMg01-543C10.TJ (MSMg01no543_c10.g1)
ACCAG608756AG608757
length767760
length of high quality
(start - end)
---404 (77 - 480)
definitionCHROMAT_FILE: MSMg01no543_c10.b1 PHD_FILE: MSMg01no543_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:25 2005CHROMAT_FILE: MSMg01no543_c10.g1 PHD_FILE: MSMg01no543_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTCCTTTTGCGGGCGCTTTAAGACTTTTTTTTTGGAGATGATCCGC
GGAATTCCTTCATTATTGCTGACTGGCCTGATTCCGTGATCCTCTGTCTT
AGGTCCCCCCCCCCCCCTTCCTAGTTTATGGGATTTGTACGCTGCGCTAC
CAGGTCCAGGCCCACTTTTATCTTTTATGTTCATATTAGACCATCATGGT
AAATGAGCTAACTCTGGATCCTTTTCTTGTCTCCTGTTACCTTGGCCCAC
TTGCCTATATGCCTTGACTTCTTTCTATGCTAGTCATTGCTTTTGGTGAG
GCTTGTTTGATAACTTCCCCAAAACGCGCCTTAGTTAGGCTTTTTATTGC
TGTAACAAAACACCACAATGAAAAACAAGTTGGGGAGATGTCTTATTTTG
GGTTTCATTGCCTGTGAAGAGGCATTATGGCCAGTGCTTCTCTTACAAAT
TTAAATATTTATTTGGGGCTAGATTACAGTTCCAGAGGTTTATTTTCATT
ATCATCATGGTTTGAAGTAGATCTTGATGTTGGAGGAGCCCAGATTTCCT
ACCATCTGATCCCAAGGAAGTAAGAAAGCCCTTGTCTTCTGTATGTATTC
AGAGGGAGGTCTGGATCACAGACTTTGAGTTTATATTGGATGACCCAAGG
TTTTTCCCTTTCATTTGATTTATTCCCATTTAACCCGGCCACATTTTTTT
CCTATAAGGTTTCACCTCCCCTAATATTGCCACTTTCTTTCGTTCAATTC
TCTACCATTATCTCTTN
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGGTTAAACTGGACCTGGTCTTG
GAGAATCTCCTGTGTGTGCCTGGAATTTTGAAGAGTCAGAATAGACACCA
TCAACCTGCCTGAAGACCAAGAATGAGCATGGGGCAGATCTGGGTAGTTA
AACAGTAAACCCATAAAGGAGGTGACCAGTGGATCCTAGAGGCACTGGAT
CCTAGATCCACCATTGTTTCACCCTCTCCCTTCCTGGGCTCAATCCAGCC
ATCTCAGGCCTCCTAACAGTGCAATGTCATGTTAGGGGGAATCTAATATC
ACAGAGCCTTTCCAGAGCGTACTGCTTTTGAGGACAGCACCAGCAAAGAT
GGCTCAGAATTTTCACTTGAGGACTAAGTCAGCCACGTTACCAGCTCTGA
TGTTCTTATGGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACAGAAAGAA
AGAACGAATGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG
GAAGGAAGGAAGGAAGGAATGAAGGAAGGAAGGAAGGAAACCGAATACCG
TTGGATTCTTTCTGAGTCCTATACAATGACTCTAGCTGTTTAATAAAATG
GTTGCGCTTAAAATAAAATCTAACCATGTTGATGTGCCGATCTGTGACTT
TTATTTTTAACAAGCTGGATTCTTGTGGGGTTCCTTTTACATCAATGGTC
TTAGTCTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_c10.g1 MSMg01no543_c10.g1 CHROMAT_FILE:
MSMg01no543_c10.g1 PHD_FILE: MSMg01no543_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:25 2005
         (404 letters)



>mm_chr2_74134024_74134833
          Length = 810

 Score =  735 bits (380), Expect = 0.0
 Identities = 400/410 (97%), Gaps = 6/410 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggttaaactggacctggtcttggagaatctcctgtgtgtgcctggaattttgaagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ctggttaaactggacctggtcttggagaatctcctgtgtgtgcctggaattctgaagagt 260

                                                                       
Query: 61  cagaatagacaccatcaacctgcctgaagaccaagaatgagcatggggcagatctgggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaatagacaccatcaacctgcctgaagaccaagaatgagcatggggcagatctgggta 320

                                                                       
Query: 121 gttaaacagtaaacccataaaggaggtgaccagtggatcctagaggcactggatcctaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaaacagtaaacccataaaggaggtgaccagtggatcctagaggcactggatcctaga 380

                                                                       
Query: 181 tccaccattgtttcaccctctcccttcctgggctcaatccagccatctcaggcctcctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaccattgtttcaccctctcccttcctgggctcaatccagccatctcaggcctcctaa 440

                                                                       
Query: 241 cagtgcaatgtcatgttaggggg------aatctaatatcacagagcctttccagagcgt 294
           |||||||||||||||||||||||      |||||||||||||||||||||||||||||| 
Sbjct: 441 cagtgcaatgtcatgttagggggtatgggaatctaatatcacagagcctttccagagcgc 500

                                                                       
Query: 295 actgcttttgaggacagcaccagcaaagatggctcagaattttcacttgaggactaagtc 354
           |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgcttttggggacagcgccagcaaagatggctcagaattttcacttgaggactaagtc 560

                                                             
Query: 355 agccacgttaccagctctgatgttcttatgggaaagaaagaaagaaagaa 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccacgttaccagctctgatgttcttatgggaaagaaagaaagaaagaa 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 810
Length adjustment: 9
Effective length of query: 395
Effective length of database: 801
Effective search space:   316395
Effective search space used:   316395
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)