BAC Information

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BAC

Clone NameMSMg01-543K15
Chromosome2 (Build37)
Map Location 86,895,993 - 86,896,637
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106
Downstream geneOlfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543K15.T7 (MSMg01no543_k15.b1)MSMg01-543K15.TJ (MSMg01no543_k15.g1)
ACCAG609146AG609147
length763789
length of high quality
(start - end)		652 (48 - 699)136 (73 - 208)
definitionCHROMAT_FILE: MSMg01no543_k15.b1 PHD_FILE: MSMg01no543_k15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:06 2005CHROMAT_FILE: MSMg01no543_k15.g1 PHD_FILE: MSMg01no543_k15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGTCTTATACAAGCAGGTGGAGGGAGGATGGGATAGAGAGTT
TTTGGGGTGGGAGCAACTGGGAAAGGGGATGACATTTGAAATGTAAATAA
AGAAAATTTCTAATAAAAAGAAATAAACTTTCTCCTAGAAAAAAAATAAA
GAATTCCTGTCTCAAAAATAAAATGCAAACAACAAGCAAACAAATACCAA
AAATACCCAACTAATAAAAAAATAATAATAAGACATGTAAGCCATGAATT
TTACCTTATTTTAGTGCTTTGAAATTACATTTATAAATTAATATATTAAC
ACTAGGAGAGGTCCTTTGCCATTCTTACAATATTCAAATCCTTTTCAAAT
CAGAAACACATTCTTTTCATCAGTAGTTAAAAGAAATGCTTTTATATTTG
AAAGCATTGGCATGTAGTGCACTAATAGAACTTCAGTTAAATTTTGAGTG
AAGAAAATTAAATTAACAGTATTAAACCTATTATGAAGCCAAAATCATTC
AGTGGTCTGATGAGATAGCTTAGTAGCTAGGAACAATGATTGCTCTTCCA
GAGGTCCCAAGTTCAATTCCCAGCAACTACATGGTGGATCATGACCATCT
ATAAAGGGATCATCTGAGTGCCTCTTCTGGCATGCATATATACCTATAAC
AGAGCAGTCATACATTCAAAAATACATAAATAAATAATTTTTGGAAGGTT
AAAAATATTTGGG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTATAATTATGAAAGGAAAAATCCACC
AAGATGACCTTTCAATTTTCAACATCTATGCCCTTCAAATGTGATGGCTC
ACATTTTTATAAACAAAATATCACTAAACCATAAATCACCCATAGAAATG
CACACATTAATAGAGAGTGACTTCAACACCCCACTTACACACAAGGAACA
GTCCATCAACACAGAAACTAAACGNAATATAACGAANATAANAATGTTAT
GNAACCAAATGTACCTACNAGATATCTACAGAACCATTCACTCAAACACA
TTAAGAAATTTTGTTCTTCTCAGCATGTCAGGGGACCTTCCTTATCCAAA
AAGCATCCTCCCCAGACACCAGAAAATTGAGGAAAAACCCCTGTAACTTA
TCACCCGGGATTGAAACTGGACTTCCCCCCCCGAAACCAGAAAAAAGACT
NTAATCCCCTGGAACNNTAAAAAGCTCCTATCTTAAAGAACCCTTGGGGC
CCGGAGAAAAAAGAAATTTGAACAATTTTCTTGGAGCCCTTGGAAAAGAA
AAAAACCCCCTTTTTTAAACTTTTTTGAAACCCCTTTAAAACAATTGTTT
AAAAAAAAAATCTCCATAAAATAATATACTCTTTCAACAAAAGTTGGGGG
GGACGGGGGTCCCCCGTNACCNNTCCNNNNCCNNNNNNTCAAAAATGACA
GAATAAAAAAATTCGTTTTTTCACCACCATGAAAAAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_k15.b1 MSMg01no543_k15.b1 CHROMAT_FILE:
MSMg01no543_k15.b1 PHD_FILE: MSMg01no543_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:06 2005
         (652 letters)



>mm_chr2_86895789_86896837
          Length = 1049

 Score = 1183 bits (612), Expect = 0.0
 Identities = 638/648 (98%), Gaps = 3/648 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgtcttatacaagcaggtggagggaggatgggatagagagtttttggggtggg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgtcttatagaagcaggtggagggaggatgggatagagagtttttggggtggg 264

                                                                       
Query: 65  agcaactgggaaaggggatgacatttgaaatgtaaataaagaaaatttctaataaaaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcaactgggaaaggggatgacatttgaaatgtaaataaagaaaatttctaataaaaaga 324

                                                                       
Query: 125 aataaactttctcctagaaaaaaaataaagaattcctgtctcaaaaataaaatgcaaaca 184
           |||||||||||||||||||||||   ||| ||||||||||||||||| ||||||||||||
Sbjct: 325 aataaactttctcctagaaaaaa---aaataattcctgtctcaaaaagaaaatgcaaaca 381

                                                                       
Query: 185 acaagcaaacaaataccaaaaatacccaactaataaaaaaataataataagacatgtaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acaagcaaacaaataccaaaaatacccaactaataaaaaaataataataagacatgtaag 441

                                                                       
Query: 245 ccatgaattttaccttattttagtgctttgaaattacatttataaattaatatattaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccatgaattttaccttattttagtgctttgaaattacatttataaattaatatattaaca 501

                                                                       
Query: 305 ctaggagaggtcctttgccattcttacaatattcaaatccttttcaaatcagaaacacat 364
           || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 502 ctgggagaggtcctttgccattcttacaatattcaaattcttttcaaatcagaaacacat 561

                                                                       
Query: 365 tcttttcatcagtagttaaaagaaatgcttttatatttgaaagcattggcatgtagtgca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcttttcatcagtagttaaaagaaatgcttttatatttgaaagcattggcatgtagtgca 621

                                                                       
Query: 425 ctaatagaacttcagttaaattttgagtgaagaaaattaaattaacagtattaaacctat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctaatagaacttcagttaaattttgagtgaagaaaattaaattaacagtattaaacctat 681

                                                                       
Query: 485 tatgaagccaaaatcattcagtggtctgatgagatagcttagtagctaggaacaatgatt 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 682 tatgaagccaaaatcattcagtggtctgatgagatagcttagtagctaggaacaatgact 741

                                                                       
Query: 545 gctcttccagaggtcccaagttcaattcccagcaactacatggtggatcatgaccatcta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gctcttccagaggtcccaagttcaattcccagcaactacatggtggatcatgaccatcta 801

                                                           
Query: 605 taaagggatcatctgagtgcctcttctggcatgcatatatacctataa 652
           |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 802 taaagggaccatctgagtgcctcttctggcatgcatatatacctataa 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1049
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1039
Effective search space:   667038
Effective search space used:   667038
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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