Query= MSMg01no543_m12.b1 MSMg01no543_m12.b1 CHROMAT_FILE:
MSMg01no543_m12.b1 PHD_FILE: MSMg01no543_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:15 2005
(584 letters)
>mm_chr2_7107901_7108884
Length = 984
Score = 1062 bits (549), Expect = 0.0
Identities = 576/585 (98%), Gaps = 2/585 (0%)
Strand = Plus / Plus
Query: 1 actggtgagtgcttgattttaagggggattccaatctctcagcctgcttagtgcacttaa 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 201 actggtgagtgcttgattttaagggggattccaatctctcagcctgtttagtacacttaa 260
Query: 61 tgaaatacatacagacccagttcctggtgctctgcaattatgtatatttaggctacacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaatacatacagacccagttcctggtgctctgcaattatgtatatttaggctacacat 320
Query: 121 acaatttgtctaagaagactgtggacatttcccacataaagaaaaacagccaaaaatcat 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaatttatctaagaagactgtggacatttcccacataaagaaaaacagccaaaaatcat 380
Query: 181 cacattattccttttagcctgttccttgacctcttaaaatagttgtcagttctaagaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacattattccttttagcctgttccttgacctcttaaaatagttgtcagttctaagaatg 440
Query: 241 tggcacatttggtgagagctttaaaatatagatgttacaatgttgtcacagtaagataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcacatttggtgagagctttaaaatatagatgttacaatgttgtcacagtaagataaa 500
Query: 301 aagcatctttgaattgccacttaactttataagttatcagatatgatatattaactttta 360
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcaactttaaattgccacttaactttataagttatcagatatgatatattaactttta 560
Query: 361 aatataacctaaagactactagtcttgaaatc-attagagtttgatgctaatgtccatgg 419
|||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 561 aatataacctaaagactacttgtcttgaaa-ctattagagtttgatgctaatgtccatgg 619
Query: 420 gtatgaataatagaaaatattttgatgtcttgtcattgaatagaacagtcaaaataagtc 479
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 620 gtatgaataatagaaaatattttgatgtcttgtcattgaatagaacagtctaaataagtc 679
Query: 480 aaagaagcagtttggcaacaaatttgcctcactgtttagctcaatgggggagacactttt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaagaagcagtttggcaacaaatttgcctcactgtttagctcaatgggggagacactttt 739
Query: 540 agactgaagagcgcaacttactagcttatattttcagtgactgtc 584
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agactgaagagcgcaacttactagcttatattttcagtgactgtc 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_m12.g1 MSMg01no543_m12.g1 CHROMAT_FILE:
MSMg01no543_m12.g1 PHD_FILE: MSMg01no543_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:15 2005
(665 letters)
>mm_chr2_7279400_7280464
Length = 1065
Score = 965 bits (499), Expect = 0.0
Identities = 514/519 (99%), Gaps = 1/519 (0%)
Strand = Plus / Minus
Query: 1 ctcaggcagtcaaagatttagggatttgggtgctattttgaatttctctctcaccatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctcaggcagtcaaagatttagggatttgggtgctattttgaatttctctctcaccatcag 460
Query: 61 cgagctcagcaaggggtaacgcatagaggatgctctggaaagcaagcatcattactgacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cgagctcagcaaggggtaacgcatagaggatgctctggaaagcaagcatcattactgacc 400
Query: 121 atgaatttggtttgtgcaaacaaggcctaatatctataatagtcttgctgtgtgatcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atgaatttggtttgtgcaaacaaggcctaatatctataatagtcttgctgtgtgatcagt 340
Query: 181 gaggagtctgcttctgaatctgtctttgcttgtccattgtagtacctacctatagaacct 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gaggagcctgcttctgaatctgtctttgcttgtccattgtagtacctacctatagaacct 280
Query: 241 atctgttacctagaaagaaattaaccttatcacttttgactttgtttgagagtatacatg 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atctgttacctggaaagaaattaaccttatcacttttgactttgtttgagagtatacatg 220
Query: 301 gcagctggaccagcttacattcccagcttagatccccacctccgcgtcagcatgcattgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gcagctggaccagcttacattcccagcttagatccccacctccgcgtcagcatgcattgt 160
Query: 361 cagtcgtacccctgatcatagttgttggtacgatggaaaggtaacatctcaaagtatttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 cagtcgtacccctgatcatagttgttggtacgatggaaaggtaacatctcaaagtatttg 100
Query: 421 gaacttgcatttgtgtgatggctgaggatttttaacactttttcaaatattcgtta-ttt 479
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct: 99 gaacttgcatttgtgtgatggctgagggttttgaacactttttcaaatattcgttatttt 40
Query: 480 tttttatttcttttcttgaaagctgtatgttcaatccat 518
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 tttttatttcttttcttgaaagctgtatgttcaatccat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
