BAC Information

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BAC

Clone NameMSMg01-543M18
Chromosome2 (Build37)
Map Location 108,546,282 - 108,592,867
singlet/doubletdoublet
Overlap geneLOC623003
Upstream geneLOC100043078, LOC668790
Downstream geneLOC100043423, LOC623031, Mett5d1, Kif18a, Bdnf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543M18.T7 (MSMg01no543_m18.b1)MSMg01-543M18.TJ (MSMg01no543_m18.g1)
ACCAG609248AG609249
length773769
length of high quality
(start - end)		680 (45 - 724)686 (77 - 762)
definitionCHROMAT_FILE: MSMg01no543_m18.b1 PHD_FILE: MSMg01no543_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:16 2005CHROMAT_FILE: MSMg01no543_m18.g1 PHD_FILE: MSMg01no543_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,592,191 - 108,592,867)(108,546,282 - 108,546,967)
sequence
CCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATAGTTTCACTCCTAGAGATTTGATTTCAGATCATTTTTAAGTCA
GAGAAATTAGACTGAACTAAACAACTCCTACAAAGAGGAGGGAACCTTGG
GAGTCACACCTAGGCTAATGTTGTCTCTAGCATTTCTAACCATTTTGCCT
TGGGGAAGTAGTTTAATCTCTGAACATTGATTTCTTCATCTGTGAGATGG
GATGAAGCATGTTACGTTGTGTAAATATTTCTGTGCAGTGCTTAGCTGAT
GGGTCATGCTGCAGATTCCTGCTTCCTACATTTCTCCCTGGGCTCTCTGT
CCACCTCTAATTCTGGATTCCTCAATTTCAACATTACACAATTTGGGGCC
TGGTAATTAATTCCCATCTCTGGCATCTAAGCTGTGAATTAAATGCTGTT
TAACAACAGCACTGGTCTCTACTTATTGGGGGTCAGAAGTTGTTTTTAAT
CGTTGTGACAACCAAAGTTACTTCTAAATAAACATTCCCTAAAGAGTAAA
CACATCCTGGATGGACACTATTGTTTAAGCTATCAAAAAATCTTAATTTC
TCTAAATCATTCTTCAGATTTAGCTTACTTCTAATTACTCAATAACTCCT
GAAAAAAGTAGAGGGATTAACTTTTCTTCTAGCAGCATCTTATCCATCTT
TAATTTATTCATTTTTCATACTTAAGATCATGTCCTCAACAATTTTCTTT
GTACCCTGCTATATCTCCAAGAA

CCATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCTGCAAAGGTACCAAGTAGTGA
TGCTGTCTGTCACCGCCACACACTGCGATGACATATGGCCAATAGGTTGT
CGGTAAATATTTAATATGCTGAAAGACAAGACACTGATGCCAAACCACTA
GGGTTACAGAGAAGCAGAGATGCCATGACAAAAGCCTAGGCCTGTTGGTG
ACAAGGGTGCTATATTACAGAGCTCAACTCTACAGGCGAAAATTAAAACT
CACTTTACTCACATAGCACAACTCCCAGCTGAAGGCCTCAGTAGATTTTC
TCTGTAGTTAAAGCTGTCTTCAGTGGTTCATTGTCTTTAACACAGGGTTG
GGGGTGGGGGAGTCACATTGTAGGACCTTCACAGCTGTCTAACCTACTAG
TCAGAGCCTGCAGTCACTGTTTTTCTCTTGTAACTCCCAAGTTCTCAACA
TAACAGTGACTGCATTGTAAAATTCTGTCATGATGCCCTGTTTTAACAAT
ATAGAAGGATTTTTCCTTTGTTTGTTGTTCGTTTGTTTGTGTTTGTTTTA
TCCAAAATGAGACATAAACTGTGCATTTGGTGGTATATTTTAATATTTTT
AATCAAAACTTATATTTTGAGGTAAATAAAACCATGTCTCACTTGTAAAG
CCTTGAAGAAGTTTTAAAGTCTTTAACCATGTACTGACTGGAACATTCTT
CTTTGTTCTCTACCACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_m18.b1 MSMg01no543_m18.b1 CHROMAT_FILE:
MSMg01no543_m18.b1 PHD_FILE: MSMg01no543_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:16 2005
         (680 letters)



>mm_chr2_108592144_108593223
          Length = 1080

 Score = 1270 bits (657), Expect = 0.0
 Identities = 672/677 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatagtttcactcctagagatttgatttcagatcatttttaagtcagagaaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ggaattcaatagtttcactcctagagatttgatttcagatcatttttaagtcagagaaat 665

                                                                       
Query: 64  tagactgaactaaacaactcctacaaagaggagggaaccttgggagtcacacctaggcta 123
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 664 tagactgaactaaacaactcctacaaagaggaaggaaccttgggagtcacacctaggcta 605

                                                                       
Query: 124 atgttgtctctagcatttctaaccattttgccttggggaagtagtttaatctctgaacat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atgttgtctctagcatttctaaccattttgccttggggaagtagtttaatctctgaacat 545

                                                                       
Query: 184 tgatttcttcatctgtgagatgggatgaagcatgttacgttgtgtaaatatttctgtgca 243
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 544 tgatttcttcatctgtgagatgggatgaagtatgttacgttgtgtaaatatttctgtgca 485

                                                                       
Query: 244 gtgcttagctgatgggtcatgctgcagattcctgcttcctacatttctccctgggctctc 303
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtgcttagctgatgggccatgctgcagattcctgcttcctacatttctccctgggctctc 425

                                                                       
Query: 304 tgtccacctctaattctggattcctcaatttcaacattacacaatttggggcctggtaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgtccacctctaattctggattcctcaatttcaacattacacaatttggggcctggtaat 365

                                                                       
Query: 364 taattcccatctctggcatctaagctgtgaattaaatgctgtttaacaacagcactggtc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taattcccatctctggcatctaagctgtgaattaaatgctgtttaacaacagcactggtc 305

                                                                       
Query: 424 tctacttattgggggtcagaagttgtttttaatcgttgtgacaaccaaagttacttctaa 483
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 304 tctacttattgggggtcagaagttgtttctaatcgttgtgacaaccaaagttacttctaa 245

                                                                       
Query: 484 ataaacattccctaaagagtaaacacatcctggatggacactattgtttaagctatcaaa 543
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 244 ataaacattccctaaagagtaaacacatcctggatggacactattggttaagctatcaaa 185

                                                                       
Query: 544 aaatcttaatttctctaaatcattcttcagatttagcttacttctaattactcaataact 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aaatcttaatttctctaaatcattcttcagatttagcttacttctaattactcaataact 125

                                                                       
Query: 604 cctgaaaaaagtagagggattaacttttcttctagcagcatcttatccatctttaattta 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 cctgaaaaaagtagagggattaacttttcttctagcagcatcttatccatctttaattta 65

                            
Query: 664 ttcatttttcatactta 680
           |||||||||||||||||
Sbjct: 64  ttcatttttcatactta 48


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no543_m18.g1 MSMg01no543_m18.g1 CHROMAT_FILE:
MSMg01no543_m18.g1 PHD_FILE: MSMg01no543_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:16 2005
         (686 letters)



>mm_chr2_108546082_108547167
          Length = 1086

 Score = 1295 bits (670), Expect = 0.0
 Identities = 682/686 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctgcaaaggtaccaagtagtgatgctgtctgtcaccgccacacactgcgatgacatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctgcaaaggtaccaagtagtgatgctgtctgtcaccgccacacactgcgatgacatat 260

                                                                       
Query: 61  ggccaataggttgtcggtaaatatttaatatgctgaaagacaagacactgatgccaaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccaataggttgtcggtaaatatttaatatgctgaaagacaagacactgatgccaaacc 320

                                                                       
Query: 121 actagggttacagagaagcagagatgccatgacaaaagcctaggcctgttggtgacaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actagggttacagagaagcagagatgccatgacaaaagcctaggcctgttggtgacaagg 380

                                                                       
Query: 181 gtgctatattacagagctcaactctacaggcgaaaattaaaactcactttactcacatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgctatattacagagctcaactctacaggcgaaaattaaaactcactttactcacatag 440

                                                                       
Query: 241 cacaactcccagctgaaggcctcagtagattttctctgtagttaaagctgtcttcagtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacaactcccagctgaaggcctcagtagattttctctgtagttaaagctgtcttcagtgg 500

                                                                       
Query: 301 ttcattgtctttaacacagggttgggggtgggggagtcacattgtaggaccttcacagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcattgtctttaacacagggttgggggtgggggagtcacattgtaggaccttcacagct 560

                                                                       
Query: 361 gtctaacctactagtcagagcctgcagtcactgtttttctcttgtaactcccaagttctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 gtctaacctactagtcagagcctgcagtcactgtttttctcttgtaattcccaagttctc 620

                                                                       
Query: 421 aacataacagtgactgcattgtaaaattctgtcatgatgccctgttttaacaatatagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 aacataacagtgactgcattgtaaaattctgtcatgatgccctgttttaacaatatagag 680

                                                                       
Query: 481 ggatttttcctttgtttgttgttcgtttgtttgtgtttgttttatccaaaatgagacata 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggatttttcctttgtttgttgtttgtttgtttgtgtttgttttatccaaaatgagacata 740

                                                                       
Query: 541 aactgtgcatttggtggtatattttaatatttttaatcaaaacttatattttgaggtaaa 600
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aactgtgcatttggtggtatagtttaatatttttaatcaaaacttatattttgaggtaaa 800

                                                                       
Query: 601 taaaaccatgtctcacttgtaaagccttgaagaagttttaaagtctttaaccatgtactg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaaaccatgtctcacttgtaaagccttgaagaagttttaaagtctttaaccatgtactg 860

                                     
Query: 661 actggaacattcttctttgttctcta 686
           ||||||||||||||||||||||||||
Sbjct: 861 actggaacattcttctttgttctcta 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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