BAC Information

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BAC

Clone NameMSMg01-543O23
Chromosome2 (Build37)
Map Location 29,930,523 - 29,931,070
singlet/doubletsinglet
Overlap genenone
Upstream geneTtf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set
Downstream genePkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543O23.T7 (MSMg01no543_o23.b1)MSMg01-543O23.TJ (MSMg01no543_o23.g1)
ACCAG609353AG609354
length752759
length of high quality
(start - end)		642 (47 - 688)591 (77 - 667)
definitionCHROMAT_FILE: MSMg01no543_o23.b1 PHD_FILE: MSMg01no543_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:27 2005CHROMAT_FILE: MSMg01no543_o23.g1 PHD_FILE: MSMg01no543_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCGGCCCAGCTTGCAGCACGACCGACCAGAGTGCTCTGGAGAGGTA
CAGCCGAGGCCTTCATGCTCTTATGGAGCTTGTTGCCTCCGTCCCCCTGT
CTCTCATAATCTGAGTTGTATGAAACCTCTAAGGGGGTTTCTGGCCCCTC
AGCAGGCAGTGTCAGTTTGCCCTGGAACATAACAACAGTGATCGGTCTTT
TCGAGGCATTGCTTTTGGAGCAGATTAATGATTCAGCCACCGCCCTTAGA
GAGAATTCAGAGATGTAGACTGTTAGTAAAGTTTGGTTGATTTTGCTAGT
GGCTTTGACTAGAAAATCTTGGGGACAGAAAGGTGTGCCTGATAATTAAG
CAAGGGACTTTTCGAGGTCAGGGAACAAGAACAATGGCAGCTCCACTGGC
TAGTTCTAACTGACATCCTTTCTCGCTAAAGAGGGGCTGGTGAGCAAGGT
GATTCGTCCTCCCTTGTACTCGTTTTTGCCCTCAGTTTCCTGATACGATT
TAATAAAAAGCTGTCAATGAGTAAGTGTGCACTCCGAGTATTTAAAGTAG
AAACGATTGTACTTTTCATTAGATATATATATAAAAGTTTAGGTTTGTGA
TTCTTTTACGGTTTTTTTTTTTTTTTTTTTTTTTGGNTTTTCGAGACAGG
ATTTCTCTGTGCAGCCTTGGCTGTCCTGGAACTCACTCTGTAAACACGGC
GG

CCATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTCTTCATTACTGGCAGCAA
AATCTTTACACATAGCCACTGGTCCAAAAGAGAGCTCTGAATCAGATTAT
TGGTTTAGCTTCTGGGAGTAGCAGTAGTACTTCCTGTTGAGTGAGGGTTT
TTTTGTGAAGTGGGGGTGGGAGACAGGCTCACTCAAGAGGTCCATCTGGC
CGGGCGTGGTGGTGCACACCTTTAATCCCAGCAGAGGCAGGCAGATTTCT
GAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGC
TACACAGAGAAACCCTGTCTTGGAAAAAAAAAAAAAAGAGGTCCATCTGA
TAAAGTTGGACAGTGGTGGTGGCGCCCATCTTTAATCTTGGGAGGCAGAG
GTGAACAGATCACTGAATTCTAGGCCAACTTGGCCTACAGAGCCATTCCA
GAACAGCCAGAGCTACACAGAGAAACTGGGTTTCAGAAAAGGAAAAGAAA
ATCCTTGTGAATGGTGGAATTACAGACATACACCACTGAGCCCCTCTTGA
AATAACTTTTTCATTTTTAAAGATTTATTTATTTATTGTATATGAGTACA
CTGTAGTTGTACAGATGGCTGTGAGCCTTCATGTGGTTGTTGAGAATTGA
ATTTTTAGGACCTCTGCTCACTCTGGTCAGCCCTGCTCTCTCTGGCCCAA
AGATTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_o23.g1 MSMg01no543_o23.g1 CHROMAT_FILE:
MSMg01no543_o23.g1 PHD_FILE: MSMg01no543_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:27 2005
         (591 letters)



>mm_chr2_29930276_29931266
          Length = 991

 Score =  998 bits (516), Expect = 0.0
 Identities = 539/548 (98%), Gaps = 4/548 (0%)
 Strand = Plus / Plus

                                                                       
Query: 48  ccaaaagagagctctgaatcagattattggtttagcttctgggagtagcagtagtacttc 107
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ccaaaagagagctctgaatcagattattggtttagcttctgggagtagcagtagtacttc 307

                                                                       
Query: 108 ctgttgagtgagggtttttttgtgaagtgggggtgggagacaggctcactcaagaggtcc 167
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 308 ctgttgagtgagggtttttttgtgaggtgggggtgggagacaggctcactcaagaggtcc 367

                                                                       
Query: 168 atctggccgggcgtggtggtgcacacctttaatcccagcagaggcaggcagatttctgag 227
           |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 368 atctggccgggcatggtggtgcacacctttaatcccagcagaggcaggcggatttctgag 427

                                                                       
Query: 228 ttcaaggccagcctggtctacaaagtgagttccaggacagccagggctacacagagaaac 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttcaaggccagcctggtctacaaagtgagttccaggacagccagggctacacagagaaac 487

                                                                       
Query: 288 cctgtcttggaaaaaaaaaaaaaa---gaggtccatctgataaagttggacagtggtggt 344
           ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 488 cctgtcttggaaaaaaaaaaaaaaaaagaggtccatctgataaagttggacagtggtggt 547

                                                                       
Query: 345 ggcgcccatctttaatcttgggaggcagaggtgaacagatcactgaattctaggccaact 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ggcgcccatctttaatcttgggaggcagaggtgaacagatcactgaattctaggccaact 607

                                                                       
Query: 405 tggcctacagagccattccagaacagccagagctacacagagaaactgggtttcagaaaa 464
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tggtctacagagccattccagaacagccagagctacacagagaaactgggtttcagaaaa 667

                                                                       
Query: 465 ggaaaagaaaa-tccttgtgaatggtggaattacagacatacaccactgagcccctcttg 523
           |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ggaaaaaaaaaatccttgtgaatggtggaattacagacatacaccactgagcccctcttg 727

                                                                       
Query: 524 aaataactttttcatttttaaagatttatttatttattgtatatgagtacactgtagttg 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aaataactttttcatttttaaagatttatttatttattgtatatgagtacactgtagttg 787

                   
Query: 584 tacagatg 591
           ||||||||
Sbjct: 788 tacagatg 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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