Query= MSMg01no543_p07.b1 MSMg01no543_p07.b1 CHROMAT_FILE:
MSMg01no543_p07.b1 PHD_FILE: MSMg01no543_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:28 2005
(499 letters)
>mm_chr2_111109793_111110692
Length = 900
Score = 924 bits (478), Expect = 0.0
Identities = 484/486 (99%), Gaps = 1/486 (0%)
Strand = Plus / Minus
Query: 15 gaatt-attattcttgggctttgtgactcttgggagctccaggcatttttcttagtgatc 73
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gaattcattattcttgggctttgtgactcttgggagctccaggcatttttcttagtgatc 641
Query: 74 tttacttcactttatttaatcaccatttttggcaacatattcattgtagtcctaattatc 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tttacttcactttatttaatcaccatttttggcaacatattcattgtagtcctaattatc 581
Query: 134 actgaccttcatctccatactcctatgtacttcctgttggccaacctctcgttcattgac 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 actgaccttcatctccatactcctatgtacttcctgttggccaacctctcgttcattgac 521
Query: 194 ttctgtctttcctcagtaactacacctaagatgatcatcgacttcctcaaggaaataaag 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttctgtctttcctcagtaactacacctaagatgatcatcgacttcctcaaggaaataaag 461
Query: 254 acgatctcttttggagggtgcatgtgtcagattttctttggacacttctttggagggggt 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acgatctcttttggagggtgcatgtgtcagattttctttggacacttctttggagggggt 401
Query: 314 gagatggtactgcttgtatcaatggcttatgaccgttatgtagctatctgtaagccactc 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gagatggtactgcttgtatcaatggcttatgaccgttatgtagctatctgtaagccactc 341
Query: 374 cattactccaacatcatgagcagacatatgtgcattggattattgatggcgtcatggatg 433
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 340 cattactccaacatcatgagcagacatatgtgcattggattagtgatggcgtcatggatg 281
Query: 434 attggctttgtgcattcaataagccaactggttataattgtaaatctgcccttctgtgga 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 attggctttgtgcattcaataagccaactggttataattgtaaatctgcccttctgtgga 221
Query: 494 tccaga 499
||||||
Sbjct: 220 tccaga 215
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 900
Length adjustment: 10
Effective length of query: 489
Effective length of database: 890
Effective search space: 435210
Effective search space used: 435210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_p07.g1 MSMg01no543_p07.g1 CHROMAT_FILE:
MSMg01no543_p07.g1 PHD_FILE: MSMg01no543_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:28 2005
(649 letters)
>mm_chr2_110970416_110971463
Length = 1048
Score = 984 bits (509), Expect = 0.0
Identities = 599/651 (92%), Gaps = 38/651 (5%)
Strand = Plus / Plus
Query: 1 cttggtt-ctctatgctgtcactacactcaggttgttgtggaactctgaactgagcaagt 59
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 199 cttggtttctctatgctgtcactacactcaggttgttgtggaactctgaattgagcaagt 258
Query: 60 tttttttgtttgtttgtttgtttgtttgttttctttttt-attcactttgagcttttcat 118
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 259 tttgtttgtttgtttgtttgtttgtttgttttctttttttattcactttgagcttttcat 318
Query: 119 tttcatctatgaatgttacagagattcacttacatttcttcaagaactgataattctttt 178
||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttcacctatgaatattacagaaattcacttacatttcttcaagaactgataattctttt 378
Query: 179 ctgaaatgtcttcaacaaatacgatgaaatttatttcaattttttagagaatataagttt 238
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 379 ctgaaatgtcttcaagaaatacgatgaaatttatttca-ttttttagagaatataagttt 437
Query: 239 cgtgcaaaaggccctgtactttaaaatatattttaaatgtactttcttgtgccttcactt 298
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cgtgcaaaaggccctgttctttaaaatatattttaaatgtactttcttgtgccttcactt 497
Query: 299 gggaatctcattcttctgtcaatgtgccttgtccaacttcaatataatgggttttcttta 358
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 498 gggaatctcattcttctgtcaatgtgccttgtccaacttcagtataatgggttttcttta 557
Query: 359 tcttatgacatttagttttgttatgtttggttgttatctcttaagggacccacctttcct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tcttatgacatttagttttgttatgtttggttgttatctcttaagggacccacctttcct 617
Query: 419 aataacagatagaaaagaagggtatttggatgggagcaggattgagagaaactgagagga 478
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 618 aataacagatagaaaagaagggcatttggatgggagcagga------------------- 658
Query: 479 gtagatggaacaggaaatgtaatcaggtatgttacatgagaaaaaaatattttaataaaa 538
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 659 ---------------aatgtaatcaggtatgttacatgagaaaaaaatattt-aataaaa 702
Query: 539 gggggaaaacaaaaaattagaactcaagtggtggtgcttgcaatgcatagtgaagtaaaa 598
|||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 703 ggggaaaaacaaaaaattagaactcaagtggtggtgctggcaatgcacagtgaagtaaaa 762
Query: 599 tttggtattgagatactcctcgcctctttacaagtggcaattatgcctata 649
|||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 763 tttggtattgagatactccttgcctctttacaagtggcaattatacctata 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1048
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1038
Effective search space: 663282
Effective search space used: 663282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
