BAC Information

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BAC

Clone NameMSMg01-544D21
Chromosome2 (Build37)
Map Location 86,780,579 - 86,781,227
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098
Downstream geneOlfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544D21.T7 (MSMg01no544_d21.b1)MSMg01-544D21.TJ (MSMg01no544_d21.g1)
ACCAG609587AG609588
length748739
length of high quality
(start - end)		656 (50 - 705)565 (83 - 647)
definitionCHROMAT_FILE: MSMg01no544_d21.b1 PHD_FILE: MSMg01no544_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:50 2005CHROMAT_FILE: MSMg01no544_d21.g1 PHD_FILE: MSMg01no544_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGA
TCCGCGGAATTCTGTCAATGTATTTGTATGAACAATTGTTCATCTCTAAC
TCTAATATCACCTGAAAATTTTATTTCAACTATCCTGCAGTCTTGAACTA
ATAAATTATGCATTCTTTTATTGACTACATTCCAAGGGAAGGTCTTAGAA
TGTATTCCCATGTTCTAAAGGGTATAGGTCAGATTGAATTTATGTAGCAG
TAGGAGAGTTTTTAACTTGACCAGATGTGGTAGAAATTGAGCTTGCCATC
ATACACTACTAAAGGAAATTTGAACACAGTTAATTTACACAGAGGTCTGT
AGCCAGTAAAATGAGACTGATGATTAGAGAATGTAATGAGGAACCTACAC
AGATTAGATATTATCCTAATGTAAACCCAGCATTGGCAGTGATTTGATTC
AGGGAGAACTTCGTTAAGATACTTAAAAATCATGGTTAAAATGTAAGTTT
GCAGTTAATACGGAGAAAGGAGCTATTAATGATTGACAAGGTTGGAATAA
AACTAAAACTGCATTCATAAAAATAGATTGCATTTTTTTTCTGGGTCCTG
GGTTGTTGGGATCCATCAATCACCAGTTTGGATTTGTTGTTACAAAAGAA
GCATTATTTCAGGAAGAGGGCACACACCCACTTCTTATCTATAGTCAAGT
CTAGACCTCTTATTTTTGGAGTACAAGAGCAAGCAAGGAATTGTGATN

AATTGTGCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGATGTTTTGTGTTAG
GAGCTTTTTGCTTTTGCATTTTTTTTTTGAGGTTTGTGTCAATGTTTTCT
ATGGTATCTTCTGTACCTGAGATTTTCTCTTCTATCTGTTGTATTCTGTT
GGTGATGCTTGAATCTATGACTTCTGATCTCTTTCCTAGGTTTTCTGTCT
CCCAGGTTGTCTCCCTTTGTGATTTCTTTCTTTTCTTTTCTTTTCTTTTT
TTAATTTCAATTTTTAGATCTTGGATGGTTTTGTTTATTTCCTTCCCCTG
TTTATTATATTCTCCTGTAATCCTTTCAAGGATTATTGTGTTTTTTCTTT
AAGGGGTTCTAACTACTTACCCGTGTTTTCCTGTATTTCTTTAAGAGAGT
TATTCACGTCCTTTTTAAATTCCTCTATAACCATCATGAGAAGTGATTTT
AGATCCAAGTCTTGCTTTTCCTGTGTGATAGTGTATCCAGGACTTGCCAT
GTTGGGAGAACTGGATTCTGATGATGCCAAGTAACCTTGGTTTCTGTTGC
TTATGTTCTTGCCCTTGTCTCTTGCCATCTGATTATCTTTAATGCTACTT
GCCCTAGCTATATCTGACTGGAGCCTGTCCTTCTTGTTGTCCTGCTTGTT
GCACAATGCCCAGAGTTCAGCTGTTTCTGTGATCCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_d21.b1 MSMg01no544_d21.b1 CHROMAT_FILE:
MSMg01no544_d21.b1 PHD_FILE: MSMg01no544_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:50 2005
         (656 letters)



>mm_chr2_86780372_86781427
          Length = 1056

 Score = 1216 bits (629), Expect = 0.0
 Identities = 644/649 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctgtcaatgtatttgtatgaacaattgttcatctctaactctaatatcacctgaa 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gaattctgtcaatgtatttgtatgaacaattgttcatctctaactctaatatcacctgaa 797

                                                                       
Query: 68  aattttatttcaactatcctgcagtcttgaactaataaattatgcattcttttattgact 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aattttatttcaactatcctgcagtcttgaactaataaattatgcattcttttattgact 737

                                                                       
Query: 128 acattccaagggaaggtcttagaatgtattcccatgttctaaagggtataggtcagattg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 acattccaagggaaggtcttagaatgtattcccatgttctaaagggtataggtcagattg 677

                                                                       
Query: 188 aatttatgtagcagtaggagagtttttaacttgaccagatgtggtagaaattgagcttgc 247
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aatttatatagcagtaggagagtttttaacttgaccagatgtggtagaaattgagcttgc 617

                                                                       
Query: 248 catcatacactactaaaggaaatttgaacacagttaatttacacagaggtctgtagccag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 catcatacactactaaaggaaatttgaacacagttaatttacacagaggtctgtagccag 557

                                                                       
Query: 308 taaaatgagactgatgattagagaatgtaatgaggaacctacacagattagatattatcc 367
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 556 taaaatgagactgatgattagagaacgtaatgaggaacctacacagattagatattatcc 497

                                                                       
Query: 368 taatgtaaacccagcattggcagtgatttgattcagggagaacttcgttaagatacttaa 427
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 496 taatgtaaacccagtattggcagtgatttgattcagggagaacttcgttaagacacttaa 437

                                                                       
Query: 428 aaatcatggttaaaatgtaagtttgcagttaatacggagaaaggagctattaatgattga 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaatcatggttaaaatgtaagtttgcagttaatacggagaaaggagctattaatgattga 377

                                                                       
Query: 488 caaggttggaataaaactaaaactgcattcataaaaatagattgcattttttttctgggt 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 caaggttggaataaaactaaaactgcattcataaaaatagattgcattttttttctgggt 317

                                                                       
Query: 548 cctgggttgttgggatccatcaatcaccagtttggatttgttgttacaaaagaagcatta 607
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cctgggttgttgggacccatcaatcaccagtttggatttgttgttacaaaagaagcatta 257

                                                            
Query: 608 tttcaggaagagggcacacacccacttcttatctatagtcaagtctaga 656
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tttcaggaagagggcacacacccacttcttatctatagtcaagtctaga 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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