BAC Information

Click to search

BAC

Clone NameMSMg01-544E10
Chromosome2 (Build37)
Map Location 88,706,346 - 88,706,700
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206
Downstream geneOlfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544E10.T7 (MSMg01no544_e10.b1)MSMg01-544E10.TJ (MSMg01no544_e10.g1)
ACCAG609613AG609614
length762745
length of high quality
(start - end)		387 (44 - 430)492 (83 - 574)
definitionCHROMAT_FILE: MSMg01no544_e10.b1 PHD_FILE: MSMg01no544_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:53 2005CHROMAT_FILE: MSMg01no544_e10.g1 PHD_FILE: MSMg01no544_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCTTCAAACTTGAACAAGAAAAAGAATGGAGAGTGCTCTTTTG
ACACCCTTATCAGTGATGAGGAGAAACCTGAAGACTTCATTGGAAATGGA
CATTAAGGGAAGAAAAAAAATTGATATCTGTCAAACAGAAGTTTTATCAA
TTTTTATAAACATCACTCTTCTTATTCAGTATGTGTGTTTGTATATGGTT
ATGGTATAATTTACAGTAAGCCTTTCAAAATTTAAACATTAAGGAGAAAA
ATAATCCAGTATAAGTTTTGAGAAAAGGTTCCAGGATATTAACAGAAAAC
AAATAGATAAACCGAAGCAACCAACTAGAATCGCCACCACCACCACCACC
ACCACCACCACCACCACCACCACCAACAACAACTACATCTACTAAACAGA
CAAAATTTAATAGCCTAATCTTTGTACTAATGTGTGGCAACTTTTTAAAA
ATTGGGACTACCAACTAATAAGGAGGAAATTCGTATAAATAATATTTGAT
GCTAAAGTTTTATGATTTTACTTTTACTATATCTAGTATTGACTCCCTAA
AAAAAATAGCCCTAGGAAATTTTTATAGACATTTGACCTGGTAGGATGGT
TAGCCATATTTAACTTATATCTCTTTTTAATTGGAGTAGTAATACTTAAC
GGAATTGTGCTTTCCCATAAGAATAAATTTTTTCCCTAATTAACGGGGTT
TTAATATAATCC

TGGAGCGAATGAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTCCCTCTTTTAAG
AAGGACCAAAGTGCCCACACTTTGGTTGTCCTTCTTGAGCTTCCTGTGGT
CTGTGAATTGTATCTTGGTTATTACAAGTTTTTGGGCTAATATACACTTA
TCAATACACTTATCAGTGTATATCATGTATGTTCTTTTGTGATTGGGTTA
ACTCACTAAGGATATTTTCTAGTCCATTCATTTGCCTAAGAGTTTCACAA
ATTCATTGTTTTTAATAGCGGAGTAGTACTCCACTGTATGTGTACCACAT
TTTCTATATCCATTCCTCTGTTGAGGGACATCTGAGTTCTTTCCAACTTC
TGGCTATTATAAATAAGGTTTCTATGAACACAGTGGAGCATATGTCTTTG
ATATATGTTGGTCTTCCTATGTTGAGGAAGGGAGCAAGGGAGGGAGAAAG
TTACAAATCAAAAGGATCCAGACATAGTTATGAATTTCGTANACAAATGA
AGGAGCAATGGGTATCTTCATAGAGAATGAATGACCAAATGTCAGGGCAC
ATAGCTTGCGGTCTGGAATTGGAACTAGAAAGAGAAGAAATAGAAAAGAT
TGCTGAGTTGGAAGGCATAAAAGCAGTCAACTTAACAGTTAGGGTCTTGA
GCAACTATTTTAGTCAGATAGGGCATAGCAAAAAAATTCCTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_e10.b1 MSMg01no544_e10.b1 CHROMAT_FILE:
MSMg01no544_e10.b1 PHD_FILE: MSMg01no544_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:53 2005
         (387 letters)



>mm_chr2_88706162_88706948
          Length = 787

 Score =  547 bits (283), Expect = e-160
 Identities = 336/355 (94%), Gaps = 3/355 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  ggaattcttcaaacttgaacaagaaaaagaatggagagtgctcttttgacacccttatca 69
           ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 539 ggaattcttcaaacaggaacaagaaaaagaatggagagtgctcttttgacacccttgtca 480

                                                                       
Query: 70  gtgatgaggagaaacctgaagacttcattggaaatggacattaagggaagaaaaaaaatt 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtgatgaggagaaacctgaagacttcattggaaatggacattaagggaagaaaaaaaatt 420

                                                                       
Query: 130 gatatctgtcaaacagaagttttatcaatttttataaacatcactcttcttattcagtat 189
           |||||||||  ||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 419 gatatctgttgaacgggagttttatcaatttttataaacatcactcttcttattcagtgt 360

                                                                       
Query: 190 gtgtgtttgtatatggttatggtataatttacagtaagcctttcaaaatttaaacattaa 249
           ||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 359 gtgtgtttgtatatgattgtggtataatttacagtaagcctttccaaatttaaacattaa 300

                                                                       
Query: 250 ggagaaaaataatccagtataagttttgagaaaaggttccaggatattaacagaaaacaa 309
           |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 299 ggagaaaaataacccagcataagttttgagaaaaggtaccaggatattaacagaaaacaa 240

                                                                  
Query: 310 atagataaaccgaagcaaccaactagaatc---gccaccaccaccaccaccacca 361
           ||||||||||| |||||||||||| |||||   ||||||||||||||||||||||
Sbjct: 239 atagataaaccaaagcaaccaactggaatcaccgccaccaccaccaccaccacca 185


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |