BAC Information

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BAC

Clone NameMSMg01-544K06
Chromosome2 (Build37)
Map Location 156,600,117 - 156,767,312
singlet/doubletdoublet
Overlap geneMyl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3
Upstream geneMmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4
Downstream geneLOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544K06.T7 (MSMg01no544_k06.b1)MSMg01-544K06.TJ (MSMg01no544_k06.g1)
ACCAG609892AG609893
length755769
length of high quality
(start - end)		640 (45 - 684)393 (73 - 465)
definitionCHROMAT_FILE: MSMg01no544_k06.b1 PHD_FILE: MSMg01no544_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:22 2005CHROMAT_FILE: MSMg01no544_k06.g1 PHD_FILE: MSMg01no544_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(156,600,117 - 156,600,751)(156,766,923 - 156,767,312)
sequence
AGTGAATATTTGCGGGCGCTATACGACTCCTATAGGTCGAGGATCCGCGG
AATTCTTGGAGCCAACTTTCTTCTCATTCCAGTCTGGTCCGTTTTCAAGT
CCTATTGGCTGAAGCACTGAAGTGTTTCCAGAACCCCTCCCCTTGTCGCC
CAGTTTCCCACTGCCCCATAAGCCCAACCAGCATCTCCCCCACTTACTGT
CTGCTCTCCTGTCCTTGAGCGTGCCATACGCTCTCTAAATCTCCTGCACT
GACATCCATTACTTTTCCTTTGTGACTTCTGACCGCTACGCTAAGCTAAA
CTACTCCCCAAATTCTAGTTCCGGAAGTGTTTCAACTGTTACCTCTAATG
TTGCCAGGACAGATAAAAACTGTTACCTTCTATTTATTTAGACAACCTTG
CTCCATAGCTCAGACTGACCTGGAACCTACACTATACTCGATGTTGGCAA
TCCTGCTGCCTCAGCTTCTCAAATGCCGAGATTACTGGCATGAACCACCG
CATCTGGCTCCATCTCCTCTCAATCTGGCTCCATTTCCCAGCATCACCCT
TAACTCCATTTCAGCCGAGCTCAGAACTGTCCCGGGATGTAGGCGGTTTC
AGGCTCCCAGGGCTCCCTAGGCAGATGGATCAGTTGCCTGCCCCATTGCG
GAGCCAGGCAGCTATTTACAAAGTAACTGAATGCCAGAAAGCCCTAGGGA
AAGAGTGATGGCCGCTGTTGTGAGGATTGAGTCTCCCTGAAAAAAAAAGA
CCATA

AGCGATATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCCGAATTCCATCCAGAACCCAGGCAGAAGCCT
AACGGGGAACTGGCAAGATGAGTTGAGCTGAAATTTGTTTCTGAAAATAG
ACTGTCTCCAGATTTACACAGATTGCTGCCGCGTTTATTAGACTGTGAGA
TGCATCGTTTTGAAATGGGAAGAATTGGGAGAGAAATGTTCAAAATGTGA
GAACATTCTGTAAATATAGCTTTTCCTCCCACTCCCTGAAATAAAGATGG
CTAAAACTGGAAGGAACCTTATTTTTTGTGTCTTGGATGTCTCGGGCAGG
GTGGTAAGTTGATCTCTACCCGCCATCAACCCAGTGTAAATGCAGAACTA
GGGGCAGCGAGAAGGCAGCAGAGGCCACCATCCCAGACTGCACGTTTCAG
AGCACTACCTAACATGGCTCCCTTCACACGGGTCTTTCAACCTTCCTTTT
CCCTCTTCCACCCCCTTTTCTCTTTTCCTTTTTAAACTTTCCTTTTTAAC
CCTTCCCCCTTTTGGAAAATTAGGTTCCTCCCAAAGGGTTCACTAAAGGG
GTTTAATTCCCCCCATAAATTCCCCCGGTGGGTTTTTTTAAATTAATATT
TATTATATTTTTTTTTTTCTCCCCCGGGGGTGTTTTTTTTTTTATAAAAA
ACACTGTGGGTGCTCTTTTTCTTTGGTTTTTTTTTTTTTTTCTTTTAACA
AAAATAACCTCACTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_k06.b1 MSMg01no544_k06.b1 CHROMAT_FILE:
MSMg01no544_k06.b1 PHD_FILE: MSMg01no544_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:22 2005
         (640 letters)



>mm_chr2_156599912_156600951
          Length = 1040

 Score = 1212 bits (627), Expect = 0.0
 Identities = 633/635 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttggagccaactttcttctcattccagtctggtccgttttcaagtcctattggc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttggagccaactttcttctcattccagtctggtccgttttcaagtcctattggc 265

                                                                       
Query: 66  tgaagcactgaagtgtttccagaacccctccccttgtcgcccagtttcccactgccccat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgaagcactgaagtgtttccagaacccctccccttgtcgcccagtttcccactgccccat 325

                                                                       
Query: 126 aagcccaaccagcatctcccccacttactgtctgctctcctgtccttgagcgtgccatac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagcccaaccagcatctcccccacttactgtctgctctcctgtccttgagcgtgccatac 385

                                                                       
Query: 186 gctctctaaatctcctgcactgacatccattacttttcctttgtgacttctgaccgctac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 386 gctctctaaatctcctgcactgacatccattacttttcctttgtgacttctgacctctac 445

                                                                       
Query: 246 gctaagctaaactactccccaaattctagttccggaagtgtttcaactgttacctctaat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gctaagctaaactactccccaaattctagttccggaagtgtttcaactgttacctctaat 505

                                                                       
Query: 306 gttgccaggacagataaaaactgttaccttctatttatttagacaaccttgctccatagc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gttgccaggacagataaaaactgttaccttctatttatttagacaaccttgctccatagc 565

                                                                       
Query: 366 tcagactgacctggaacctacactatactcgatgttggcaatcctgctgcctcagcttct 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcagactgacctggaacctacactatactcgatgttggcaatcctgctgcctcagcttct 625

                                                                       
Query: 426 caaatgccgagattactggcatgaaccaccgcatctggctccatctcctctcaatctggc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 caaatgccgagattactggcatgaaccaccgcatctggctccatctcctctcaatctggc 685

                                                                       
Query: 486 tccatttcccagcatcacccttaactccatttcagccgagctcagaactgtcccgggatg 545
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 686 tccatttcccagcatcacccttaactccttttcagccgagctcagaactgtcccgggatg 745

                                                                       
Query: 546 taggcggtttcaggctcccagggctccctaggcagatggatcagttgcctgccccattgc 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 taggcggtttcaggctcccagggctccctaggcagatggatcagttgcctgccccattgc 805

                                              
Query: 606 ggagccaggcagctatttacaaagtaactgaatgc 640
           |||||||||||||||||||||||||||||||||||
Sbjct: 806 ggagccaggcagctatttacaaagtaactgaatgc 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no544_k06.g1 MSMg01no544_k06.g1 CHROMAT_FILE:
MSMg01no544_k06.g1 PHD_FILE: MSMg01no544_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:22 2005
         (393 letters)



>mm_chr2_156766723_156767512
          Length = 790

 Score =  698 bits (361), Expect = 0.0
 Identities = 384/393 (97%), Gaps = 3/393 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccatccagaacccaggcagaagcctaacggggaactggcaagatgagttgagctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 attccatccagaacccaggcagaagcctaacggggaactggcaagatgagttgagctgaa 531

                                                                       
Query: 61  atttgtttctgaaaatagactgtctccagatttacacagattgctgccgcgtttattaga 120
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 530 atttgtttctgaaaatagactgtctccagatttacacagat---tgccgcgtttattaga 474

                                                                       
Query: 121 ctgtgagatgcatcgttttgaaatgggaagaattgggagagaaatgttcaaaatgtgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctgtgagatgcatcgttttgaaatgggaagaattgggagagaaatgttcaaaatgtgaga 414

                                                                       
Query: 181 acattctgtaaatatagcttttcctcccactccctgaaataaagatggctaaaactggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 acattctgtaaatatagcttttcctcccactccctgaaataaagatggctaaaactggaa 354

                                                                       
Query: 241 ggaaccttattttttgtgtcttggatgtctcgggcagggtggtaagttgatctctacccg 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 353 ggaaccttattttttgtgtcttggatgtcttgggcagggtggtaagttgatctctaccca 294

                                                                       
Query: 301 ccatcaacccagtgtaaatgcagaactaggggcagcgagaaggcagcagaggccaccatc 360
           |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||
Sbjct: 293 ccatcaacccagtgtaaatgcaaaactaggggcagggaggaggcagcagaggccaccgtc 234

                                            
Query: 361 ccagactgcacgtttcagagcactacctaacat 393
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ccagactgcacgtttcagagcactacctaacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 790
Length adjustment: 9
Effective length of query: 384
Effective length of database: 781
Effective search space:   299904
Effective search space used:   299904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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