Query= MSMg01no544_k20.b1 MSMg01no544_k20.b1 CHROMAT_FILE:
MSMg01no544_k20.b1 PHD_FILE: MSMg01no544_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:25 2005
(536 letters)
>mm_chr2_28022165_28023099
Length = 935
Score = 895 bits (463), Expect = 0.0
Identities = 509/531 (95%), Gaps = 13/531 (2%)
Strand = Plus / Minus
Query: 7 gaattccctgcggcctacatggaaagacactctagcaaaagctctgttgacctttaaccc 66
|||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 562 gaattccctgtggccaacatggaaagacactctagcaaaagctctgttggcctttaaccc 503
Query: 67 ctgttcttca-tatgtgctgcagaacccaccctgcctcttgcccctctctgtgctgtgat 125
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctgttctt-agtatgtgctgcagaacccaccctgcctcttgcccctctctgtgctgtgat 444
Query: 126 ccattggccctcttaccccacatctgagtgaggacagctgagctgactcttccttccacc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccattggccctcttaccccacatctgagtgaggacagctgagctgactcttccttccacc 384
Query: 186 agggtccagatcaaccaaacccacgtgctcccaccgggggtggtggagacgctgggcagc 245
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 383 agggtccagatcaaccaaacccacgtgctcccactgggggtggtggagatgctgggcagc 324
Query: 246 ctacctatgggctgggcagagtccaaggttgagggagtccagggcccgcagcttgtagtg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctacctatgggctgggcagagtccaaggttgagggagtccagggcccgcagcttgtagtg 264
Query: 306 atgccccgaggtgataaatgacagatggtgaatcgagtctacaccctggcaggtagcagg 365
|||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 263 atgccccgaggtgacaaatgacagatggtgaatcgagtctacaccct-----------gg 215
Query: 366 cagtagcaaccatccttgatcatcagctagcctctgcctccagtcctcctgctccatgtg 425
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 cagtagcaaccatccttggtcatcagctagcctctgcctccagtcctcctgctccatgtg 155
Query: 426 tgtgctctgctaggctgcttcctcggcccctggcccccagtcagaacaaagccttcactt 485
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 154 tgtgctctgctaggctgcttcctcggctgctggcccccagtcagaacaaagccttcactt 95
Query: 486 ccacagacgtcactgttagggagaagcaagcccaacactcgcttctctgaa 536
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ccacagacgtcactgttagggagaagcaagcccaacactcgcttctctgaa 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space: 486550
Effective search space used: 486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_k20.g1 MSMg01no544_k20.g1 CHROMAT_FILE:
MSMg01no544_k20.g1 PHD_FILE: MSMg01no544_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:25 2005
(545 letters)
>mm_chr2_27861883_27862827
Length = 945
Score = 1031 bits (533), Expect = 0.0
Identities = 542/545 (99%)
Strand = Plus / Plus
Query: 1 ctagctgaggtgagaaaatgcctgttgctcatggccgatgggatttcatcaaaaccaagc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ctagctgaggtgagaaaatgcctgttgctcatggccgatggaatttcatcaaaaccaagc 260
Query: 61 actagcaggaaccggtgagctcccagggttatgaaggggcagccatgagtagagcaagtc 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagcaggaaccggtgagctcccagggttatgaaggggcagccatgagtagagcaagtc 320
Query: 121 agagttctgagggcagaaacgataattttgtatatgtatgtctgtgtgcaggacatgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagttctgagggcagaaacgataattttgtatatgtatgtctgtgtgcaggacatgtca 380
Query: 181 tgcatgtatatacgtgaatacgcatgtctgcatgcatttgtatgtatgtgtatttgtatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatgtatatacgtgaatacgcatgtctgcatgcatttgtatgtatgtgtatttgtatg 440
Query: 241 tgtgggcctgcatgtgtggtatgcttgcgcgtaatctcctgcgtgtgaacatgaccgtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgggcctgcatgtgtggtatgcttgcgcgtaatctcctgcgtgtgaacatgaccgtgg 500
Query: 301 acgtgcatgtgtgcttgtttatttgtgcttatgggtatgtgtgtgctcacatggcatgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acgtgcatgtgtgcttgtttatttgtgcttatgggtatgtgtgtgctcacatggcatgtg 560
Query: 361 tacatgtgtatatgtgtgtctgtgtgtgcacaggcagagcgttcacaaagaattgacaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacatgtgtatatgtgtgtctgtgtgtgcacaggcagagcgttcacaaagaattgacaga 620
Query: 421 ataacagttttcggaagctgctgctcaggccctggagtacagtgtggtctctgctcacca 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 ataacagttttcggaagctgctgcttaggccctggagtacagtgtggtctctgctcacca 680
Query: 481 gcttggaggaggccaaaccggctcagagacttccgttcacaagctctgctagtaaccttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcttggaggaggccaaaccggctcagagacttccgttcacaagctctgctagtaaccttc 740
Query: 541 ctgtc 545
|||||
Sbjct: 741 ctgtc 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
