Query= MSMg01no544_o11.b1 MSMg01no544_o11.b1 CHROMAT_FILE:
MSMg01no544_o11.b1 PHD_FILE: MSMg01no544_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:43 2005
(490 letters)
>mm_chr2_87891844_87892733
Length = 890
Score = 859 bits (444), Expect = 0.0
Identities = 474/484 (97%), Gaps = 4/484 (0%)
Strand = Plus / Minus
Query: 9 gaattcattgcattgcgctggctttacttgggttctattactttacaacaaatttgttaa 68
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gaattcattgcagtgtgctggctttacttgggttctattactttacaacaaatttgttaa 631
Query: 69 caatagagcaaaagattgcattgatatttatctgcagggttgtatggccatgtgttttga 128
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 630 caatagagcaaaagattgcattgatattcatctgcagggttgtatggccatgtgttttga 571
Query: 129 ccccatattttctcaaggtgtgtcacacacctttgagtctcaggagcttctatg-ttttt 187
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 570 ccccatattttctcaaggtgtgtcacacacctttgagtctcaggagcttctatgtttttt 511
Query: 188 tcagttgtgattacagaaaaataatatagagtgagtagagtttctaggtacctctacttc 247
||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 510 tcagttgtgatta-agaaaaataatatagcgtgtgtagagtttctaggtacctctacttc 452
Query: 248 tgaatcttcacatttcttatttcagagaaggatgcttactagaacttctgtgcctatccc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgaatcttcacatttcttatttcagagaaggatgcttactagaacttctgtgcctatccc 392
Query: 308 tcttcttacagggggaaa-gtttaatcctttgggagataagtgtcttaacctactccaaa 366
|||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tcttcttaca-ggggaaaggcttaatcctttgggagataagtgtcttaacctactccaaa 333
Query: 367 acacagtttctttataaaacttcttatcaactcaataatgatagacatagaaatagatac 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 acacagtttctttataaaacttcttatcaactcaataatgatagacatagaaatagatac 273
Query: 427 tccaacacttcctgtagctgtctagattcttggtctcaatgatcaattcaaatatatcac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tccaacacttcctgtagctgtctagattcttggtctcaatgatcaattcaaatatatcac 213
Query: 487 taca 490
||||
Sbjct: 212 taca 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_o11.g1 MSMg01no544_o11.g1 CHROMAT_FILE:
MSMg01no544_o11.g1 PHD_FILE: MSMg01no544_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:44 2005
(531 letters)
>mm_chr2_87689367_87690292
Length = 926
Score = 940 bits (486), Expect = 0.0
Identities = 518/532 (97%), Gaps = 7/532 (1%)
Strand = Plus / Plus
Query: 1 tgtttatttatgtctttttatacctaaaagtgcatatatatatgtacagcttgtaattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtttatttatgtctttttatacctaaaagtgcatatatatatgtacagcttgtaattta 260
Query: 61 ttgttttaaatgtttcaataacttgccataaagagtaggagaaagattatttgaataata 120
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 261 ttgttttaaatgtttcaataacttgccataaagagtatgagaaagattatttgaataaca 320
Query: 121 ataaataatgtgtttgcagacattctacttatagaagcaacttttctgttcgtgaattat 180
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 a------atgtgtttgcagacattctacttatagaagcaacttttctgttcgtgaattat 374
Query: 181 aaataaagaataaaacacttatgagtctaattttattccatgagttta-ctaaacagaat 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 375 aaataaagaataaaacacttatgagtctaattttattccatgagtttatctaaacagaat 434
Query: 240 ttttatatccaaataaaatgttgagtaatcaggagactttttgataatgtatgcaagtgg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttttatatccaaataaaatgttgagtaatcaggagactttttgataatgtatgcaagtgg 494
Query: 300 taaagtcacaggagtgtgttctcttttcttagtcacatgcaccttacttgaaaacacaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 taaagtcacaggagtgtgttctcttttcttagtcacatgcaccttacttgaaaacacaca 554
Query: 360 tcataaaccaataaaaatctgtgataaatgcttgattaacaaaaaatcctaactgttggc 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 555 tcataaaccaataaaaatctgtgataaatgcttgattaacaaaaaatcttaactgttagc 614
Query: 420 catatttagaaacattttttgagggactaatccgttctgctttatgtttaaatatattaa 479
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 615 catatatagaaacattttttgagggactaatctgttctgctttatgtttaaatatattaa 674
Query: 480 gattattatcattataaaagaggggtcatctactatatccaattactcttaa 531
||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 675 gattattatcattataaaagaggggtcatctactatagccaattactcttaa 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 926
Length adjustment: 10
Effective length of query: 521
Effective length of database: 916
Effective search space: 477236
Effective search space used: 477236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
