BAC Information

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BAC

Clone NameMSMg01-545G20
Chromosome2 (Build37)
Map Location 91,753,139 - 91,902,703
singlet/doubletdoublet
Overlap geneD030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
Upstream genePtpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik
Downstream genePhf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545G20.T7 (MSMg01no545_g20.b1)MSMg01-545G20.TJ (MSMg01no545_g20.g1)
ACCAG610493AG610494
length733725
length of high quality
(start - end)		672 (39 - 710)593 (68 - 660)
definitionCHROMAT_FILE: MSMg01no545_g20.b1 PHD_FILE: MSMg01no545_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:23 2005CHROMAT_FILE: MSMg01no545_g20.g1 PHD_FILE: MSMg01no545_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,902,035 - 91,902,703)(91,753,139 - 91,753,723)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TGTTTCCCTCACACACTTTGATATATCTGGAATTTAGAAAAGAAAGGAAA
AAGAATGATATTTGATGTTTTTCATAGTTTGCGTCGGGACCAAGCCTTGC
ATTGTGGGTCAAATGCCAATAAAAGGAAAGAAAAAGAAAAAGAAAAAAGA
AAAAAAAACTCGGTCACCACATCTTTAGAAGGATCACTTTTATTCTGTAT
TTGAAAGAACTTTCTGTTAAAATTAATGATAGTATATATATCTTTAGTGA
CCAAAATGATTGTTGTGGGGCCACGAAAAGTCACCACTTATTGATGGCTG
AGTGCTGAATGTTAAGTGAGTGCTGAGTGTTAAGTGCTCCATTTATGCAC
AGTTCAGACAATTCTCTCAAATGTGCAGCAGCAGATTCTTTATTATCTAT
TCCATTTGCAGAGCTAAATTGAGCTCAGAGATAGAGGGTGACCTGAAAAG
AATGAGAGGGGGGAATAAAAAGAAAACCCACAAAGGAACTTAACAACCAT
TGGGCACATGCTCTATGATCAAAGCATTGTGGTGCAATCCGCACTGGAGA
CGCGAAGAAATAAAATATCACCAGATTCCTACTCTCGAGAAGTTGAGAAA
AAAAAGCTTGAAGGAGAGAAAACTCAATAATTAATAATAATAATGTCAAT
TATCAACACATTTCAGTCAGTAGTATTTATTAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCAGGTGGAGGGCGACTTCTGTCTGAAAGGTAA
AGTACAGCGGTGACTGTGAGCAGAATTTGCTGCTGAAGAGATGTGTACCT
CCTAGTGTCTGACCTCCCACAAGAATCCTGTCTTTGTCTTGCTGATTTTG
GACTGCAGTTTATTTCTTCTTGTTTGGGAGTTGGGGACTAGGGTGAGTAG
AAGGGTAGAAGCAGACTTTTTCAGGTTTTAAGGGCTTGAACCTTATTTCC
TGTTGCTCCCCATCTCTGGCTTCCTTAAAGCAGAGCAGGAAGTTGCTGGT
CCAGAAGCCCAGCAGACAGCAGCATCAGGAATCCTGGCAGAACCCGAAGC
TTCTGTCCTCAGCCCTGCAAGCTTCCTTCTCTCAGAGCTCCAGACACCAC
CACCACCACCACCACCACCACCACCACCACACACACAGAACCAGCTTCTC
CACGAATAATAGCCCATTTCAAAAACTAGACAGAAAGGGAAGGTGAGCTG
CAAGAGGAAGTGAGGGGTTGGTTGCTAAGTGCCCTCTGGGACCCTGATTC
CAGATACTGGTTGTCAGGGTTCTCCTTATCTGCACTGTCTCATCCAGAGG
CAGGCGCAATAGCTCCTCACTCTTTAAGTAGACTGAACTTGTGGCCAGGT
CTCCAGGGGCATACATAGGAGAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_g20.b1 MSMg01no545_g20.b1 CHROMAT_FILE:
MSMg01no545_g20.b1 PHD_FILE: MSMg01no545_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:23 2005
         (672 letters)



>mm_chr2_91901665_91902736
          Length = 1072

 Score = 1197 bits (619), Expect = 0.0
 Identities = 657/671 (97%), Gaps = 5/671 (0%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattctatgtttccc--tcacacactttgatatatctggaatttagaaaagaaaggaaa 62
            ||||||||||  | ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 gaattctatg--taccgttcacacactttgatatatctggaatttagaaaagaaaggaaa 982

                                                                        
Query: 63   aagaatgatatttgatgtttttcatagtttgcgtcgggaccaagccttgcattgtgggtc 122
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 981  aagaatgatatttgatgtttttcagagtttgcgtcgggaccaagccttgcattgtgggtc 922

                                                                        
Query: 123  aaatgccaataaaaggaaagaaaaagaaaaagaaaaaag-aaaaaaaaactcggtcacca 181
            ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 921  aaatgccaataaaaggaaagaaaaagaaaaagagaaaagaaaaaaaaaactcggtcacca 862

                                                                        
Query: 182  catctttagaaggatcacttttattctgtatttgaaagaactttctgttaaaattaatga 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 861  catctttagaaggatcacttttattctgtatttgaaagaactttctgttaagattaatga 802

                                                                        
Query: 242  tagtatatatatctttagtgaccaaaatgattgttgtggggccacgaaaagtcaccactt 301
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 801  tagtatatatatctttagtgaccaaaatgattgttgtggggccacggaaagtcaccactt 742

                                                                        
Query: 302  attgatggctgagtgctgaatgttaagtgagtgctgagtgttaagtgctccatttatgca 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 741  attgatggctgagtgctgaatgttaagtgagtgctgagtgttaagtgctccatttatgcg 682

                                                                        
Query: 362  cagttcagacaattctctcaaatgtgcagcagcagattctttattatctattccatttgc 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681  cagttcagacaattctctcaaatgtgcagcagcagattctttattatctattccatttgc 622

                                                                        
Query: 422  agagctaaattgagctcagagatagagggtgacctgaaaagaatgagaggggggaataaa 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621  agagctaaattgagctcagagatagagggtgacctgaaaagaatgagaggggggaataaa 562

                                                                        
Query: 482  aagaaaacccacaaaggaacttaacaaccattgggcacatgctctatgatcaaagcattg 541
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561  aagaaaacccacaaaggaacttaacaatcattgggcacatgctctatgatcaaagcattg 502

                                                                        
Query: 542  tggtgcaatccgcactggagacgcgaagaaataaaatatcaccagattcctactctcgag 601
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501  tggtgcaatccgcactggagacgtgaagaaataaaatatcaccagattcctactctcgag 442

                                                                        
Query: 602  aagttgagaaaaaaaagcttgaaggagagaaaactcaataattaataataataatgtcaa 661
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441  aagttgagaaaaaaaagcttgaaggagagaaaactcaataattaaaaataataatgtcaa 382

                       
Query: 662  ttatcaacaca 672
            |||||||||||
Sbjct: 381  ttatcaacaca 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no545_g20.g1 MSMg01no545_g20.g1 CHROMAT_FILE:
MSMg01no545_g20.g1 PHD_FILE: MSMg01no545_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:23 2005
         (593 letters)



>mm_chr2_91752939_91753931
          Length = 993

 Score = 1065 bits (551), Expect = 0.0
 Identities = 581/593 (97%), Gaps = 8/593 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaggtggagggcgacttctgtctgaaaggtaaagtacagcggtgactgtgagcagaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ccaggtggagggcgacttctgtctgaaaggtaaagtacagcggtggctgtgagcagaatt 260

                                                                       
Query: 61  tgctgctgaagagatgtgtacctcctagtgtctgacctcccacaagaatcctgtctttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctgctgaagagatgtgtacctcctagtgtctgacctcccacaagaatcctgtctttgt 320

                                                                       
Query: 121 cttgctgattttggactgcagtttatttcttcttgtttgggagttggggactagggtgag 180
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 321 cttgctgattttggactgcagtttatttcttcttgtttgagagttggggactagggtggg 380

                                                                       
Query: 181 tagaagggtagaagcagactttttcaggttttaagggcttgaaccttatttcctgttgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaagggtagaagcagactttttcaggttttaagggcttgaaccttatttcctgttgct 440

                                                                       
Query: 241 ccccatctctggcttccttaaagcagagcaggaagttgctggtccagaagcccagcagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccccatctctggcttccttaaagcagagcaggaagttgctggtccagaagcccagcagac 500

                                                                       
Query: 301 agcagcatcaggaatcctggcagaacccgaagcttctgtcctcagccctgcaagcttcct 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 agcagcatcaggaatcctggcagaaccggaagcttctgtcctcagccctgcaagcttcct 560

                                                                       
Query: 361 tctctcagagctccagacaccaccaccaccaccaccaccaccaccaccaccacacacaca 420
           ||||||||||||||||||||||||||||||||||| || || || ||    |||||||||
Sbjct: 561 tctctcagagctccagacaccaccaccaccaccac-ac-ac-ac-ac----acacacaca 612

                                                                       
Query: 421 gaaccagcttctccacgaataatagcccatttcaaaaactagacagaaagggaaggtgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gaaccagcttctccacgaataatagcccatttcaaaaactagacagaaagggaaggtgag 672

                                                                       
Query: 481 ctgcaagaggaagtgaggggttggttgctaagtgccctctgggaccctgattccagatac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ctgcaagaggaagtgaggggttggttgctaagtgccctctgggaccctgattccagatac 732

                                                                
Query: 541 tggttgtcagggttctccttatctgcactgtctcatccagaggcaggcgcaat 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tggttgtcagggttctccttatctgcactgtctcatccagaggcaggcgcaat 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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