BAC Information

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BAC

Clone NameMSMg01-545K01
Chromosome2 (Build37)
Map Location 87,252,076 - 87,252,647
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432
Downstream geneOlfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545K01.T7 (MSMg01no545_k01.b1)MSMg01-545K01.TJ (MSMg01no545_k01.g1)
ACCAG610643AG610644
length728732
length of high quality
(start - end)		686 (38 - 723)592 (64 - 655)
definitionCHROMAT_FILE: MSMg01no545_k01.b1 PHD_FILE: MSMg01no545_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:39 2005CHROMAT_FILE: MSMg01no545_k01.g1 PHD_FILE: MSMg01no545_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTG
ATTTATCTGTGACTTATCATGAAGGGGTGTTGTATTTGGTCAAATGTTTT
CTCAGTATCTAACTACATGATCATGTGGTTTTTGTCTTTGTTTTTGTTTA
TATAGTGGATTATGGTGATGGATTTCTGTATATTAAACATCCCTGCATCA
CTGGGATGAAGCCTACTTGGTCATGATGGATGATAGTTTTGATGTGTTCT
TGGATTCGGTGTGCGAGGATTTTATTTAGTATTATGGCATTGATATACAT
GAGGAATATTGGTCTGAAGTTCTCTTTCTTTGTTGGATATTGGTGTGGTT
TAGGTATCAGAGTAATTGTGGCTTCATAGAAGGAATTGGGTAGAGTACCT
TCTGTTTCTATTTTGTGGAATAGTTTGAGTACAGTTGGAATTAGGATTTC
TTTGAAGGTCTGATAGAACTCTGCACTGAACCCATCTGGTCCTGGGCTTT
TTTTGGTCGGGAAACTCTTAATGACTGCTTATATTTTTTGGGGGGAGGTG
GGGCTGTTAAGATCGTTAATCTGATCTTGATTTAAATTTAGTACTTTTTT
ATTATCTGTCTAGGAAATTGTCCATTTCATCCAGGTTTTCAAGATTTTTG
TTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGAGTATACCTTTTGTAGT
AGGATTGATGATGTTTTGGATTTCCTCA

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGTTTGGCTCTGTACCATATTTTTAATTGGTTATTTG
ATTTATTTGTCTCTAATTTCTTGAGTTCATTATATATCTTGAATGTTAGT
CCTTTGTTGGAAATAGGGTTGGTCAAGTTCTTTTCCCAGTATCTAGACAG
ACGTTTTGTTCTATTGATTTGGTCCTTAGCCTTGCAAACAGTTTTCAGTT
TCAGAGGAACTATTTATTTATTTATTTATTTATTTATTTATTTGTTTATT
TATTTGCTTATTTATTTATTATTTATTTTAGACCAAGTGATAAACCATTT
ACTATAACACATAATGGGTGGAACATAGTTTTTAGTCAGTCATTCAAATC
ACCAGTATAAACAGTCACAATGTTAGAAGGTGATTTATCTGTGATATTAT
TAAAGCAATGGAAACCCTAGTTATTTGTTTGTTTGTTTGCTTTTTTACAT
ATTTATTTATAGAAGATTGCTTCATGCAAGTCTAATTTTAGCATCATTAA
ATATTCTTAGCATTATATTATTGACTCTAGTTACTATTTCAAGTCACTAT
CCTGAAGTAGAGTCTTGCTGCAGTACAAAAGTAAAGCATTGATTCAAATG
ATGAGCAGCCTGCCCCGTCATGGNAAGGGCAACTAGAGCAGTCATGATAT
CATAGGTGTGAACAGCATAAAGAATTTCTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_k01.g1 MSMg01no545_k01.g1 CHROMAT_FILE:
MSMg01no545_k01.g1 PHD_FILE: MSMg01no545_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:39 2005
         (592 letters)



>mm_chr2_87251799_87252790
          Length = 992

 Score = 1027 bits (531), Expect = 0.0
 Identities = 568/593 (95%), Gaps = 22/593 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttggctctgtaccatatttttaattggttatttgatttatttgtctctaatttcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 tgtttggctctgtaccatatttttaattggttatttgatttatttgtctctaatttcttg 790

                                                                       
Query: 61  agttcattatatatcttgaatgttagtcctttgttggaaatagggttggtcaagttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 agttcattatatatcttgaatgttagtcctttgttggaaatagggttggtcaagttcttt 730

                                                                       
Query: 121 tcccagtatctagacagacgttttgttctattgatttggtccttagccttgcaaacagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tcccagtatctagacagacgttttgttctattgatttggtccttagccttgcaaacagtt 670

                                                                       
Query: 181 t-tcagtttcagaggaactatttatttatttatttatttatttatttatttgtttattta 239
           | | ||||||||||||||||||||||||||||                    ||||||||
Sbjct: 669 tat-agtttcagaggaactatttatttattta--------------------tttattta 631

                                                                       
Query: 240 tttgcttatttatttattatttattttagaccaagtgataaaccatttactataacacat 299
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 cttgcttatttatttattatttattttagaccaagtgataaaccatttactataacacat 571

                                                                       
Query: 300 aatgggtggaacatagtttttagtcagtcattcaaatcaccagtataaacagtcacaatg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aatgggtggaacatagtttttagtcagtcattcaaatcaccagtataaacagtcacaatg 511

                                                                       
Query: 360 ttagaaggtgatttatctgtgatattattaaagcaatggaaaccctagttatttgtttgt 419
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 510 ttagaaggtgatttatctgtgatattattaaagcaacggaaaccctagttatttgtttgt 451

                                                                       
Query: 420 ttgtttgcttttttacatatttatttatagaagattgcttcatgcaagtctaattttagc 479
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 450 ttgtttgcttttttacatatttatttatagaagattacttcatgcaagtctaattttagc 391

                                                                       
Query: 480 atcattaaatattcttagcattatattattgactctagttactatttcaagtcactatcc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atcattaaatattcttagcattatattattgactctagttactatttcaagtcactatcc 331

                                                                
Query: 540 tgaagtagagtcttgctgcagtacaaaagtaaagcattgattcaaatgatgag 592
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgaagtagagtcttgctgcagtacaaaagtaaagcattgattcaaatgatgag 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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