BAC Information

Click to search

BAC

Clone NameMSMg01-545L07
Chromosome2 (Build37)
Map Location 100,122,143 - 100,122,594
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621386, LOC668702
Downstream geneLOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545L07.T7 (MSMg01no545_l07.b1)MSMg01-545L07.TJ (MSMg01no545_l07.g1)
ACCAG610703AG610704
length736728
length of high quality
(start - end)
453 (63 - 515)633 (67 - 699)
definitionCHROMAT_FILE: MSMg01no545_l07.b1 PHD_FILE: MSMg01no545_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:45 2005CHROMAT_FILE: MSMg01no545_l07.g1 PHD_FILE: MSMg01no545_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCA
TTAGATTCACAATAGTTGTGAACTAATGTCATAAGATAAATCATAAAAAT
TATTATAGTAAGCACTATAAAGATTTTAAAAACTTGTCGATGGATACTGA
ATTCAAGGTGAACTCAGAACATTTTACTTTTACTCTGGGAGAAATATAAG
ACTATTCTCTCTGTTTCACAGATTAAATAAAATAAAAATAATAAAAGATA
AAAGGCATGTAGAGGCAGAGAAAGAACCCTAAACCAAAATTTCTCAGTTG
TAAATTTTAAGGAATTACATTTCCATTTTAATGACAAATGTATCCCTATG
TAAGTCTACTTTTAAAACACTAGTGCTTTTAATGAGAGGTATAAAGTAAC
ATGCCCAATTTTAGTTATTTACTAAAAATAAATGTAATATCAGAATCATT
TGTTCTTTTGTATTTTCAAATCTTATTGTTTTAAAGTCAATGGTGTAGGA
TTTATGTTGCAGACTTAAAAAAAAAAAAAACAAAAAACAAAAAACAAAAA
ACACCTTTCTACTCAAAAGAGGTTTTGTCCTGACTTTAGCTAAGAGTCAG
CAATGGGAGCTAGAAAGCTTGAATGGACCAGCTCCTGTAATCAGGCAAGA
CTGCCAATAGAGGGATTGGCAAACCAATCCAACCACCAAATCTTGGACCC
ACTATTTGTCCTGTCTACAAGATGTGTAGGGGTAAA
TGTGTGAGGTCTGGCGGCCGCCTGGAATCAGTATGTGAGTGAACTATAGA
AGGTTCGAAAAAGGCATGGATGTAAGACACCAAACATGGATGGTGAGTTG
AACCTACTCTCGTGGTTCTACCCCTAAATTCAATATATCTCTGAAACCCA
ACTTAAGGATTTTATTATTTTATTTATTTATTTATTTATTTATTTATTTA
TTTATTTATTTATTTATTTATTTATTTATTTATTTTAGTTAGGGTTACTG
TTGCTGTGATGAAACATCATAACCCAAAGCAAGTTGGGGACAAAAGTGTT
TATTTGGCATACAGTTCCACATGACAGTTCAACATTAAAGTCAAAAGAAC
TCAAACAGTGCTGGAACATGGTGGCAGGAGGTGCAGAGACGATGGAAGAG
TGCTGCTCATCTAATAGAACCCATAACTACTCAAAATGGGGTAGTCCCTC
ATCTATCAATCGCTTATTAAGAAATATTCTACAGGTTTACCTGCAGCCTG
GTGTTATGGAGCCATGTTTTTAATTGGAATTGCTTTTCCTCAAATGCCTT
TAGCATATGTCAAGTTGACACAGCAGTATCAAATAACCTGGACCCCCGAG
ATATCTCAGACCCTGGGCCACCAACCAATCAGCATACATCAGCTGATATA
AGGCCCCCGACACACATATAACGGAGGACTGCCGGGTCTGGACTCAGACA
GAGAAGATGAACCTAACTCTCAAGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_l07.b1 MSMg01no545_l07.b1 CHROMAT_FILE:
MSMg01no545_l07.b1 PHD_FILE: MSMg01no545_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:45 2005
         (453 letters)



>mm_chr2_100121943_100122795
          Length = 853

 Score =  851 bits (440), Expect = 0.0
 Identities = 449/452 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagttgtgaactaatgtcataagataaatcataaaaattattatagtaagcactataaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagttgtgaactaatgtcataagataaatcataaaaattattatagtaagcactataaag 260

                                                                       
Query: 61  attttaaaaacttgtcgatggatactgaattcaaggtgaactcagaacattttactttta 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttttaaaacttgtcgatggatactgaattcaaggtgaactcagaacattttactttta 320

                                                                       
Query: 121 ctctgggagaaatataagactattctctctgtttcacagattaaataaaataaaaataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgggagaaatataagactattctctctgtttcacagattaaataaaataaaaataat 380

                                                                       
Query: 181 aaaagataaaaggcatgtagaggcagagaaagaaccctaaaccaaaatttctcagttgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaagataaaaggcatgtagaggcagagaaagaaccctaaaccaaaatttctcagttgta 440

                                                                       
Query: 241 aattttaaggaattacatttccattttaatgacaaatgtatccctatgtaagtctacttt 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aattttaaggaattacatttccattttaatgacacatgtatccctatgtaagtctacttt 500

                                                                       
Query: 301 taaaacactagtgcttttaatgagaggtataaagtaacatgcccaattttagttatttac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaacactagtgcttttaatgagaggtataaagtaacatgcccaattttagttatttac 560

                                                                       
Query: 361 taaaaataaatgtaatatcagaatcatttgttcttttgtattttcaaatcttattgtttt 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 taaaaataaatgtaatatcagaatcatttgttcttctgtattttcaaatcttattgtttt 620

                                           
Query: 421 aaagtcaatggtgtaggatttatgttgcagac 452
           ||||||||||||||||||||||||||||||||
Sbjct: 621 aaagtcaatggtgtaggatttatgttgcagac 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)