Query= MSMg01no545_p05.b1 MSMg01no545_p05.b1 CHROMAT_FILE:
MSMg01no545_p05.b1 PHD_FILE: MSMg01no545_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:04 2005
(674 letters)
>mm_chr2_115684719_115685792
Length = 1074
Score = 1286 bits (665), Expect = 0.0
Identities = 668/669 (99%)
Strand = Plus / Minus
Query: 5 gaattcgccgtctgcaagttgatggcctgacccttaaactcctttgccaatcctccttca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gaattcgccgtctgcaagttgatggcctgacccttaaactcctttgccaatcctccttca 814
Query: 65 gggtgtgcctggccaagcatctcttggtagcctggagtgagttcgcacgtgggagaaagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gggtgtgcctggccaagcatctcttggtagcctggagtgagttcgcacgtgggagaaagg 754
Query: 125 tgtggaggaggaatggactgaccggtctgcagggcagatttgcactttgttgtaggcaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tgtggaggaggaatggactgaccggtctgcagggcagatttgcactttgttgtaggcaac 694
Query: 185 tctgcttgggcagctggggggccccgtggggatagtcccccctcccgccactccgcctgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tctgcttgggcagctggggggccccgtggggatagtcccccctcccgccactccgcctgt 634
Query: 245 cccgcatggggctggctggttttgtcttgcaacagtttgggatctggacaagccccctct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cccgcatggggctggctggttttgtcttgcaacagtttgggatctggacaagccccctct 574
Query: 305 cctgcccccacctcgccgcccgaggcttttcttccctcttcggcctctggctgggcggcg 364
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 573 cctgcccccacctcgccgcccgaggcttttcttccctctccggcctctggctgggcggcg 514
Query: 365 ctctaggtccttgtaggtgtttctatgactacattgtgtgtgtgggagggtcagatgtgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctctaggtccttgtaggtgtttctatgactacattgtgtgtgtgggagggtcagatgtgg 454
Query: 425 gggttgcccgagagagggccgttcctgggcggtcatttatcaatgtcacccacataatga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gggttgcccgagagagggccgttcctgggcggtcatttatcaatgtcacccacataatga 394
Query: 485 ttctctctgcagcgtcctattgatgaggataattacattagctcagagtgactgatcaat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttctctctgcagcgtcctattgatgaggataattacattagctcagagtgactgatcaat 334
Query: 545 gaaaaaccaccacacaaaaacttcttcactcctctataataccaaaaaccgatacagaaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaaaaaccaccacacaaaaacttcttcactcctctataataccaaaaaccgatacagaaa 274
Query: 605 taacagaaagtctgattttcttcccctcctctatccaccaatggattctgtacaccccgc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 taacagaaagtctgattttcttcccctcctctatccaccaatggattctgtacaccccgc 214
Query: 665 cccctcccc 673
|||||||||
Sbjct: 213 cccctcccc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_p05.g1 MSMg01no545_p05.g1 CHROMAT_FILE:
MSMg01no545_p05.g1 PHD_FILE: MSMg01no545_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:04 2005
(663 letters)
>mm_chr2_115594958_115596019
Length = 1062
Score = 1257 bits (650), Expect = 0.0
Identities = 659/662 (99%), Gaps = 1/662 (0%)
Strand = Plus / Plus
Query: 1 ttgcattttggaagagtggagagccacaacagggagacccttccattctatgggttagaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ttgcattttggaagagtggagagccacaacagggagacccttccatcctatgggttagaa 260
Query: 61 aagggaagagtgttctacctgaattgggaacccaagttttctgataaaatggattccccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagggaagagtgttctacctgaattgggaacccaagttttctgataaaatggattccccg 320
Query: 121 ggtagttgtagaaaatcttcactgaattgcacagtcgctggtacctgtcccgaatcctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtagttgtagaaaatcttcactgaattgcacagtcgctggtacctgtcccgaatcctat 380
Query: 181 gaaacattcgctgtctatatctgccaggaccatctgaggatagcccagtctctggaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaacattcgctgtctatatctgccaggaccatctgaggatagcccagtctctggaaaac 440
Query: 241 taagaatttactccctgaaggactttttttttaaatgctctcgctgacagtctttaaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagaatttactccctgaaggactttttttttaaatgctctcgctgacagtctttaaaaa 500
Query: 301 tagtctgctgcttctactgcctttttaaaactgaacaaaatgtcctcagcatctgttttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtctgctgcttctactgcctttttaaaactgaacaaaatgtcctcagcatctgttttt 560
Query: 361 cctagactgtccccagcatctgctgagagagacaaagtctgtttgctccaacacagaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctagactgtccccagcatctgctgagagagacaaagtctgtttgctccaacacagaaca 620
Query: 421 gccacggactgtcactgctgtggctttttctgtcccttccccagttgccagtcatttatt 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 gccacggactgtcactgctgtggctttttctgtctcttccccagttgccagtcatttatt 680
Query: 481 tcagccgactggtgtcccaccttaacctgcctctcacaccctttggccccaacacatact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcagccgactggtgtcccaccttaacctgcctctcacaccctttggccccaacacatact 740
Query: 541 tgacatttgaagttttagactctatataaccaaacgtaacagccaattcacagaatcaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgacatttgaagttttagactctatataaccaaacgtaacagccaattcacagaatcaaa 800
Query: 601 aaaaaaaaaaaccctagaaaaatcttccgtgagtaacaccagctcctcagacacgcaaca 660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaaaaaaaa-ccctagaaaaatcttccgtgagtaacaccagctcctcagacacgcaaca 859
Query: 661 cg 662
||
Sbjct: 860 cg 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space: 686956
Effective search space used: 686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
